Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l18r
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0459 + 8649448-8651994 31 0.64
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 30 1.9
01_07_0065 - 40851101-40851247,40851352-40851495,40851781-408518... 29 3.4
11_07_0016 + 27421880-27421997,27422885-27423162,27424478-274244... 29 4.5
09_02_0265 - 6449153-6449162,6449660-6449710,6450386-6450396,645... 29 4.5
08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150 28 5.9
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 7.8
02_05_0033 + 25250312-25250563,25251469-25251540,25251925-252520... 28 7.8
>03_02_0459 + 8649448-8651994
Length = 848
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 3 ILLMTIRSYLQWILPGGELGRLPGTFRVGTNGFNDFD 113
IL R+Y ++ILPGG LPG R +G D D
Sbjct: 61 ILDEVFRTYAEFILPGGRGLSLPGLLRTYDDGAGDVD 97
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 262 WYYNWMI-NKNRMKLSKMREDKKKILEEVMNTETYKVAKEILDKYGSPDDQSKSLKPFVP 86
W W + N+ KL ++ +++ V+N E + +E+LD+ KP VP
Sbjct: 552 WSNRWFVLNERSGKLGYTKKQEERHFRGVINLEECNL-EEVLDEEDPTRSLKDPKKPNVP 610
Query: 85 TLNVPG 68
+ PG
Sbjct: 611 DIGTPG 616
>01_07_0065 -
40851101-40851247,40851352-40851495,40851781-40851872,
40851954-40852035,40852127-40852193,40852284-40852375,
40852470-40852586,40852764-40852881,40852969-40853161,
40853258-40853339,40853607-40853744,40853829-40854023
Length = 488
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 71 GYVQGWYERLQRFRLVVWT--SVFVKDFFGNLICLCVHHLFQYLLF 202
G++ GWY LV W VFVK + + + ++ LF +LF
Sbjct: 426 GFLNGWYYEGTNNTLVYWVRKHVFVKVWHSTRVGILLYVLFAQILF 471
>11_07_0016 +
27421880-27421997,27422885-27423162,27424478-27424488,
27425164-27425214,27425712-27425721
Length = 155
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 3 ILLMTIRSYLQWILPGGELGRLPGTFRVGTNGFNDFDWSSGL 128
++ +TI Y Q IL GG + PG G N + D SG+
Sbjct: 42 LMTLTIVIYFQRILSGGSEMQTPGANSYGANSGHQRDADSGM 83
>09_02_0265 -
6449153-6449162,6449660-6449710,6450386-6450396,
6451712-6451989,6452877-6452994
Length = 155
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 3 ILLMTIRSYLQWILPGGELGRLPGTFRVGTNGFNDFDWSSGL 128
++ +TI Y Q IL GG + PG G N + D SG+
Sbjct: 42 LMTLTIVIYFQRILSGGSEMQTPGANSYGANSGHQRDADSGM 83
>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
Length = 383
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = -3
Query: 208 EDKKKILEEVMNTETYKVAKEILDKYGSPDDQSKSLKPFVPTLNVP----GNLP--SSPP 47
++K+++ TET E++ YG P L P+ P VP G +P +PP
Sbjct: 248 DEKEQVASGSNTTETGAAIPEVMPPYGYP----MMLPPYYPPAFVPMPYYGYVPVFYAPP 303
Query: 46 GRIHCKYDLI 17
G + +++++
Sbjct: 304 GAVQAQHEVV 313
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 265 ILMTVRISQARAKPVKARHTATNATNTDSSP-RTCSSKGP 381
+L T + A P KARH ++N +++ ++P RT SS P
Sbjct: 151 LLPTPATAADPANPNKARHPSSNKSSSPAAPRRTNSSSSP 190
>02_05_0033 +
25250312-25250563,25251469-25251540,25251925-25252069,
25253449-25253558,25253665-25254079,25254166-25254413
Length = 413
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = -3
Query: 274 SSISWYYNWMINKNRMKLSKMREDKKKILEEVMNTETYKVAKEILDKY 131
S++ + + K++ L K+R ++K ++E+ Y + ++++ KY
Sbjct: 148 STVVKFTRMLERKDQKTLEKLRAERKAKIDELKERTNYYLTQQLIQKY 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,408
Number of Sequences: 37544
Number of extensions: 286660
Number of successful extensions: 885
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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