Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l18r
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membr...    39   0.003
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    31   0.99 
U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha ...    29   2.3  
AF068709-11|AAC19247.1|  106|Caenorhabditis elegans Downstream o...    29   2.3  
AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alph...    29   2.3  
AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alph...    29   2.3  
AF025461-3|AAB70998.3|  632|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z78539-7|CAB01726.2|  560|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U64598-9|AAK39212.2|  174|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U64598-8|AAQ82848.1|  396|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membrane
           protein) homologprotein 1 protein.
          Length = 342

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -3

Query: 277 RSSISWYYNWMINKNRMKLSKMREDKKKILEEVMNTETYKVAKEILDKY 131
           R  I+ +++W  N+   KL      K  +L+ V  T  +K AKEILD+Y
Sbjct: 86  RYVINGFFSWRTNRTTQKLENAISQKTTLLDLVKETLKFKEAKEILDRY 134


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
            protein F25G6.9 protein.
          Length = 1373

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/45 (26%), Positives = 28/45 (62%)
 Frame = -3

Query: 271  SISWYYNWMINKNRMKLSKMREDKKKILEEVMNTETYKVAKEILD 137
            SI  ++N +I+  +  L ++ ++ KK+LE++ N    +V ++I +
Sbjct: 931  SIEKFFNGLISSPKKDLKEIEQNNKKVLEKLWNNGNNEVRRKIYE 975


>U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha
           family protein 3 protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -3

Query: 205 DKKKILEEVMNTETYKVAKEILDKYGSPDDQSKSLK 98
           DK + L+   N + YK+A EI+D + S DD++ +++
Sbjct: 453 DKIENLQNHENEDIYKLAFEIIDNFFSSDDETGNVE 488


>AF068709-11|AAC19247.1|  106|Caenorhabditis elegans Downstream of
           daf-16 (regulatedby daf-16) protein 3 protein.
          Length = 106

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 469 ERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVLYY 368
           +R   Y  Q  K+ IGYV+  +V +++LFA   Y
Sbjct: 71  QRPTNYIHQDSKQFIGYVLLIAVVIFLLFAACKY 104


>AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alpha 3
           protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -3

Query: 205 DKKKILEEVMNTETYKVAKEILDKYGSPDDQSKSLK 98
           DK + L+   N + YK+A EI+D + S DD++ +++
Sbjct: 453 DKIENLQNHENEDIYKLAFEIIDNFFSSDDETGNVE 488


>AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alpha-3
           subunit protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -3

Query: 205 DKKKILEEVMNTETYKVAKEILDKYGSPDDQSKSLK 98
           DK + L+   N + YK+A EI+D + S DD++ +++
Sbjct: 362 DKIENLQNHENEDIYKLAFEIIDNFFSSDDETGNVE 397


>AF025461-3|AAB70998.3|  632|Caenorhabditis elegans Hypothetical
           protein M01D1.2a protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 208 EDKKKILEEVMNTETYKVAKEILDKYGSPDDQSKSLKPFVPTLNVPGNL 62
           E K K+L+ ++N  +       LD  G  DD+ + L+ F   L +P NL
Sbjct: 397 ESKLKVLDNLINENS---GAGTLDASGINDDKPEELEDFESKLRIPDNL 442


>AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical
           protein M01D1.2b protein.
          Length = 670

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 208 EDKKKILEEVMNTETYKVAKEILDKYGSPDDQSKSLKPFVPTLNVPGNL 62
           E K K+L+ ++N  +       LD  G  DD+ + L+ F   L +P NL
Sbjct: 397 ESKLKVLDNLINENS---GAGTLDASGINDDKPEELEDFESKLRIPDNL 442


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -3

Query: 238 KNRMKLSKMREDKKKILEEVMNTETYKVAKEILDKYGSPDDQSKSLKPFVPTLNVPGNLP 59
           K + K  K++ED KK  ++    +T K       K GS    S +L P  P  N+P   P
Sbjct: 166 KEKTKEEKVKEDPKK--DDKSGVDTIK-------KEGSTAPASTALVPPPPRQNIPPPTP 216

Query: 58  SSPP 47
             PP
Sbjct: 217 RRPP 220


>Z78539-7|CAB01726.2|  560|Caenorhabditis elegans Hypothetical
           protein C31E10.5 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 271 MTVRISQARAKPVKARHTATNATNTDSSPRTCS 369
           MTVRIS+A A     R       N + SP  CS
Sbjct: 379 MTVRISRAMANTFGTRERNARIDNMEDSPDLCS 411


>U64598-9|AAK39212.2|  174|Caenorhabditis elegans Hypothetical
           protein C52B9.2a protein.
          Length = 174

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -3

Query: 277 RSSISWYYNWM--INKNRMKLSKMREDKKKILEEVMNTETYKVAKEILDKYGSPDDQSKS 104
           R ++ W  N +  +  N+  ++KM  ++K   +++   + YK+++ I +KY   D   K+
Sbjct: 34  RKALRWTGNGLEFVLVNKELVAKMWGNRKHNTKDM---DYYKLSRAIREKYEKKDKADKN 90

Query: 103 LKP 95
           +KP
Sbjct: 91  IKP 93


>U64598-8|AAQ82848.1|  396|Caenorhabditis elegans Hypothetical
           protein C52B9.2b protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -3

Query: 277 RSSISWYYNWM--INKNRMKLSKMREDKKKILEEVMNTETYKVAKEILDKYGSPDDQSKS 104
           R ++ W  N +  +  N+  ++KM  ++K   +++   + YK+++ I +KY   D   K+
Sbjct: 101 RKALRWTGNGLEFVLVNKELVAKMWGNRKHNTKDM---DYYKLSRAIREKYEKKDKADKN 157

Query: 103 LKP 95
           +KP
Sbjct: 158 IKP 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,988
Number of Sequences: 27780
Number of extensions: 264098
Number of successful extensions: 994
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)