Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l18r
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    25   0.87 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.1  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 238 KNRMKLSKMREDKKKILEEVMNTETYKVAKE 146
           K   +  K+  +KKK+LEE  + + Y  ++E
Sbjct: 247 KKDRRYEKLHNEKKKLLEERTSRKRYSRSRE 277


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 340 NTDSSPRTCSSKGPQITRIDP 402
           N  +SP TC +K    T+I P
Sbjct: 17  NATNSPHTCRTKNGDYTKIMP 37


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 400 GLYVLFAVLYYYM 362
           G+ VLF  LYYY+
Sbjct: 10  GIAVLFLALYYYL 22


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 70  RVRSGLVRTASTISTGR 120
           R RSGLV  +ST  TGR
Sbjct: 384 RNRSGLVSGSSTPGTGR 400


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 384 NNTYRPTEYAITY 422
           NN Y+P  Y I Y
Sbjct: 328 NNNYKPLHYNINY 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,359
Number of Sequences: 438
Number of extensions: 3501
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)