Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l18f
         (613 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B4590 Cluster: PREDICTED: similar to Limb and n...    83   7e-15
UniRef50_UPI0000D56744 Cluster: PREDICTED: similar to limb and n...    75   1e-12
UniRef50_UPI00005842B0 Cluster: PREDICTED: similar to lunapark; ...    64   3e-09
UniRef50_UPI00015A5F26 Cluster: Protein lunapark-A.; n=3; Danio ...    56   5e-07
UniRef50_Q7Q3Q4 Cluster: ENSANGP00000007110; n=2; Culicidae|Rep:...    54   2e-06
UniRef50_Q7K2N0 Cluster: GH24644p; n=2; Sophophora|Rep: GH24644p...    50   6e-05
UniRef50_Q9C0E8 Cluster: Protein lunapark; n=43; Euteleostomi|Re...    46   7e-04
UniRef50_A0DFE0 Cluster: Chromosome undetermined scaffold_49, wh...    37   0.43 
UniRef50_A0CF48 Cluster: Chromosome undetermined scaffold_174, w...    36   0.57 
UniRef50_Q97DP2 Cluster: Membrane associated, signal transductio...    34   2.3  
UniRef50_A2DG42 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_Q12600 Cluster: Protein SIS2; n=1; Candida tropicalis|R...    33   4.0  
UniRef50_Q4JZZ7 Cluster: Flippase Wzx; n=2; Streptococcus pneumo...    33   7.1  
UniRef50_A3I0K9 Cluster: Putative ROK family transcriptional rep...    33   7.1  
UniRef50_Q8I7Q1 Cluster: ORF; n=3; Endopterygota|Rep: ORF - Dros...    32   9.3  

>UniRef50_UPI00015B4590 Cluster: PREDICTED: similar to Limb and
           neural patterns; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to Limb and neural patterns - Nasonia
           vitripennis
          Length = 413

 Score = 82.6 bits (195), Expect = 7e-15
 Identities = 37/88 (42%), Positives = 60/88 (68%)
 Frame = +3

Query: 306 MGLIISRFRRKKTTTEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVL 485
           MG+++SRFR+KKTT EIL+ L+  IK IE+ GQ  E   K+++G ++ YSV LY++ A++
Sbjct: 1   MGMLLSRFRKKKTTIEILDDLDKKIKDIEQYGQNTELRRKKIVGTLIIYSVALYIITALV 60

Query: 486 YYYMYVGRSQYWLHSLLYASPLLVCPCL 569
           +Y+ +     Y  + + Y +PLL+ P L
Sbjct: 61  FYFYFFPAELY--YQIFYMTPLLIFPIL 86


>UniRef50_UPI0000D56744 Cluster: PREDICTED: similar to limb and
           neural patterns; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to limb and neural patterns -
           Tribolium castaneum
          Length = 386

 Score = 74.9 bits (176), Expect = 1e-12
 Identities = 35/88 (39%), Positives = 59/88 (67%)
 Frame = +3

Query: 306 MGLIISRFRRKKTTTEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVL 485
           MG+II++FR+KKTT E+LE+LE +I+SIE   +  EQT K+++G  +  S+ +Y + A++
Sbjct: 1   MGIIITKFRKKKTTYEVLEKLEKEIQSIEEFRRSTEQTQKKMVGRFIFISICVYCVTALI 60

Query: 486 YYYMYVGRSQYWLHSLLYASPLLVCPCL 569
            Y+ +   S Y    ++Y  PL++ P L
Sbjct: 61  LYFYFFPASAY--ERIIYIIPLIILPML 86


>UniRef50_UPI00005842B0 Cluster: PREDICTED: similar to lunapark;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to lunapark - Strongylocentrotus purpuratus
          Length = 392

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 31/88 (35%), Positives = 53/88 (60%)
 Frame = +3

Query: 306 MGLIISRFRRKKTTTEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVL 485
           MG I+++FR+ KTT EILE ++ DI  + R  +   +  K  +G ++ YSV  Y++ A+ 
Sbjct: 1   MGAILAKFRKGKTTVEILEGIDKDIDGLLRSKRRNVELEKHYMGSLLLYSVIGYLIMALF 60

Query: 486 YYYMYVGRSQYWLHSLLYASPLLVCPCL 569
           +Y++Y   +  WL  ++   PLL+ P L
Sbjct: 61  FYFLY--NATTWLQRVVQILPLLLFPFL 86


>UniRef50_UPI00015A5F26 Cluster: Protein lunapark-A.; n=3; Danio
           rerio|Rep: Protein lunapark-A. - Danio rerio
          Length = 391

 Score = 56.4 bits (130), Expect = 5e-07
 Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
 Frame = +3

Query: 306 MGLIISRFRRKKTTTEILERLENDIKSIERDGQYKEQTHKRV---IGYVMAYSVGLYVLF 476
           MG ++SR+R K +T E+LE L+ DI+ +E   +Y+E+ HK++   +  ++ YS  LY++ 
Sbjct: 1   MGAVVSRWRAKPSTVEVLEGLDKDIQVLE---EYREKNHKQLKLWVYRLLLYSALLYLMA 57

Query: 477 AVLYYYMYVGRSQYWLHSLLYASPLLVCPCL 569
             + Y  Y+   +  +  L+ ASP L+ P L
Sbjct: 58  CAVVYAWYI--PERMIGKLIVASPFLLFPLL 86


>UniRef50_Q7Q3Q4 Cluster: ENSANGP00000007110; n=2; Culicidae|Rep:
           ENSANGP00000007110 - Anopheles gambiae str. PEST
          Length = 328

 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 25/79 (31%), Positives = 48/79 (60%)
 Frame = +3

Query: 333 RKKTTTEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVLYYYMYVGRS 512
           ++K+T + LE LE  IKS+E      +   KR +G  +  S+ LY++ ++++Y+++   +
Sbjct: 1   KEKSTFQKLEELEEKIKSLEAYTISTQDRRKRFVGRFLVTSIVLYIVGSLIFYFVFFPPT 60

Query: 513 QYWLHSLLYASPLLVCPCL 569
             W   ++Y+ PLL+CP L
Sbjct: 61  --WNERIVYSVPLLICPIL 77


>UniRef50_Q7K2N0 Cluster: GH24644p; n=2; Sophophora|Rep: GH24644p -
           Drosophila melanogaster (Fruit fly)
          Length = 387

 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 23/86 (26%), Positives = 49/86 (56%)
 Frame = +3

Query: 306 MGLIISRFRRKKTTTEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVL 485
           MG ++S+ R++K+T  +LE L+  I+++E+     E+  +R +   + +++G Y++   L
Sbjct: 1   MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFTIGAYIVGFGL 60

Query: 486 YYYMYVGRSQYWLHSLLYASPLLVCP 563
           ++Y Y   +       +Y  PLL+ P
Sbjct: 61  WWYFYFPPTMQ--ECFMYLVPLLLFP 84


>UniRef50_Q9C0E8 Cluster: Protein lunapark; n=43; Euteleostomi|Rep:
           Protein lunapark - Homo sapiens (Human)
          Length = 428

 Score = 46.0 bits (104), Expect = 7e-04
 Identities = 20/66 (30%), Positives = 40/66 (60%)
 Frame = +3

Query: 306 MGLIISRFRRKKTTTEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVL 485
           MG + SR+R K +T E+LE ++ +I+++E   +  ++  K  +G ++ YS  LY+   ++
Sbjct: 1   MGGLFSRWRTKPSTVEVLESIDKEIQALEEFREKNQRLQKLWVGRLILYSSVLYLFTCLI 60

Query: 486 YYYMYV 503
            Y  Y+
Sbjct: 61  VYLWYL 66


>UniRef50_A0DFE0 Cluster: Chromosome undetermined scaffold_49, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_49,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 887

 Score = 36.7 bits (81), Expect = 0.43
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
 Frame = +3

Query: 156 ILYKLILVEVIISIYINSSP*LCASSIFSTGKLLNYLIT-VFNSSRLNRRKMGLIISRFR 332
           + Y  +L+++II IYI +   L  S I ++ K+L  L T + N  + N RK+  +   F+
Sbjct: 299 VSYLELLIDLIIDIYIINQYSLICSLILNSQKMLKNLPTKILNLVKDNNRKVDRMSQSFQ 358

Query: 333 R--KKTTTEILERLENDIKSIERDGQYKE 413
           R  KK+  +  + ++   K IE   +Y E
Sbjct: 359 RKQKKSLNKKQQSIQELQKEIEIQKKYAE 387


>UniRef50_A0CF48 Cluster: Chromosome undetermined scaffold_174,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_174,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 521

 Score = 36.3 bits (80), Expect = 0.57
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = +3

Query: 147 YFLILYKLILVEVI-ISIYINSSP*LC-ASSIFSTGKLLNYLITVFNSSRLNRRKMGLII 320
           Y  + YK+  ++   I IY   S  L  A SI ST  L++YL+ + N S+L +  +  +I
Sbjct: 269 YMTLYYKIDNIQQKQIIIYPKLSEVLAEAGSIASTLLLISYLVVILNESQLYQDAINYVI 328

Query: 321 SRFRRKKTTTEILERLENDIKSIERDGQ 404
           S         +I + +   I  +ERDG+
Sbjct: 329 SLHFPDFAQVKIKKNIFGQIIQVERDGK 356


>UniRef50_Q97DP2 Cluster: Membrane associated, signal transduction
           histidine kinase-like ATPase; n=1; Clostridium
           acetobutylicum|Rep: Membrane associated, signal
           transduction histidine kinase-like ATPase - Clostridium
           acetobutylicum
          Length = 397

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 9/35 (25%), Positives = 25/35 (71%)
 Frame = +3

Query: 462 LYVLFAVLYYYMYVGRSQYWLHSLLYASPLLVCPC 566
           + +LF ++Y++ Y+ +++YW++ L+    +++C C
Sbjct: 48  IMILFFIMYWFSYIFKNRYWIYFLIQG--IIICAC 80


>UniRef50_A2DG42 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 420

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 22/112 (19%), Positives = 53/112 (47%)
 Frame = +3

Query: 267 ITVFNSSRLNRRKMGLIISRFRRKKTTTEILERLENDIKSIERDGQYKEQTHKRVIGYVM 446
           IT   S+   + +  +   +FR      E+L + +    +IER   Y    +K ++  ++
Sbjct: 41  ITFIPSNSSKQTEKSITFKQFRVSSQQKEVLSKQK--YLNIERKALYSNFQYKGLLIGLL 98

Query: 447 AYSVGLYVLFAVLYYYMYVGRSQYWLHSLLYASPLLVCPCL*YSYGHQYPGI 602
            + V + ++ +++++Y  V           Y + ++ C C+ Y + ++YPG+
Sbjct: 99  VFYVVIVIISSIIFHYAIVK----------YPTCVIRCGCVYYCFFNRYPGL 140


>UniRef50_Q12600 Cluster: Protein SIS2; n=1; Candida tropicalis|Rep:
           Protein SIS2 - Candida tropicalis (Yeast)
          Length = 531

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 576 NITSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDP 457
           N T++   + A+ T T  T T+S+  T ++KG Q + IDP
Sbjct: 220 NSTTSNTALAAQGTTTTTTTTNSNSNTTTTKGEQNSNIDP 259


>UniRef50_Q4JZZ7 Cluster: Flippase Wzx; n=2; Streptococcus
           pneumoniae|Rep: Flippase Wzx - Streptococcus pneumoniae
          Length = 483

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 426 RVIGYVMAYS-VGLYVLFAVLYYYMYVGRSQYWLHSLLYASPLL 554
           RVI +V+  S +GLY     LY   Y    +YWL++L +  PL+
Sbjct: 187 RVISFVLVQSCIGLYFYVLNLYRGKYFFCKKYWLYALNFNLPLI 230


>UniRef50_A3I0K9 Cluster: Putative ROK family transcriptional
           repressor protein; n=1; Algoriphagus sp. PR1|Rep:
           Putative ROK family transcriptional repressor protein -
           Algoriphagus sp. PR1
          Length = 415

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +3

Query: 366 LENDIKSIERDGQYK---EQTHKRVIGYVMAYSVGLYVLFAVLYYYMYVGRSQYWLHSLL 536
           LEND +++    ++K   E +HK V+G  + + +GL ++     Y    G +  + HS +
Sbjct: 196 LENDARAMTL-AEFKFGSEHSHKNVLGIFVGWGIGLGIIIDGKIYQGASGFAGEFSHSPI 254

Query: 537 YASPLLVCPC 566
           + S  + C C
Sbjct: 255 FESRDVTCTC 264


>UniRef50_Q8I7Q1 Cluster: ORF; n=3; Endopterygota|Rep: ORF -
            Drosophila melanogaster (Fruit fly)
          Length = 2360

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +3

Query: 348  TEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVLYYYMYVGRSQYWLH 527
            TE  ERL N+IK ++ + Q  +  H   I       + L ++  ++ Y++     Q  + 
Sbjct: 2290 TEEFERLNNEIKFMKENHQKLKDLHFHHISGHAGLIIALILMIVLIIYFIRKCAVQQRMQ 2349

Query: 528  SLLYASPLLV 557
            ++ +A PL V
Sbjct: 2350 AITFAGPLPV 2359


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,141,151
Number of Sequences: 1657284
Number of extensions: 9721005
Number of successful extensions: 25487
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25471
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)