Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l18f
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    26   0.29 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.50 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.7  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   6.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   6.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   6.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   6.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   6.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   6.2  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   6.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   6.2  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   6.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   6.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.2  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 513 DSSPRTC-SSKGPQITRIDP 457
           D +PRT  S +GPQIT ++P
Sbjct: 271 DENPRTYRSDEGPQITELEP 290


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 422 VGLLLVLAI-SFYAFYIVF*SFEYFCCCFL 336
           V LL +L I  F+  +I+F     FCC F+
Sbjct: 158 VHLLFLLCIYHFFCAFIIFTMHLLFCCAFI 187



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +3

Query: 462 LYVLFAVLYYYMYVGRSQYWLHSLLYASPLLVCPCL*YSY 581
           +++L  V  YY Y     +    +++   LL   C+ Y Y
Sbjct: 250 VHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFY 289


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 513 DSSPRTC-SSKGPQITRIDP 457
           D +PR   S +GPQIT ++P
Sbjct: 504 DENPRNYRSDEGPQITELEP 523


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 513 DSSPRTC-SSKGPQITRIDP 457
           D +PR   S +GPQIT ++P
Sbjct: 504 DENPRNYRSDEGPQITELEP 523


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 519 WLHSLLYASPLLVCPC 566
           W H LL   PL  C C
Sbjct: 302 WNHGLLQGDPLSGCLC 317


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 474 FAVLYYYMYVGRSQYW 521
           F +L YY+Y     YW
Sbjct: 9   FLLLLYYIYSKHYSYW 24


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           T T      ++  + ++   +SP+  S+ G       PL+TP
Sbjct: 91  TQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           T T      ++  + ++   +SP+  S+ G       PL+TP
Sbjct: 91  TQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           T T      ++  + ++   +SP+  S+ G       PL+TP
Sbjct: 91  TQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           T T      ++  + ++   +SP+  S+ G       PL+TP
Sbjct: 91  TQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           T T      ++  + ++   +SP+  S+ G       PL+TP
Sbjct: 91  TQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           T T      ++  + ++   +SP+  S+ G       PL+TP
Sbjct: 47  TQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 88


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           T T      ++  + ++   +SP+  S+ G       PL+TP
Sbjct: 91  TQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           T T      ++  + ++   +SP+  S+ G       PL+TP
Sbjct: 91  TQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           T T      ++  + ++   +SP+  S+ G       PL+TP
Sbjct: 91  TQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 472 YLRSFTTTCTWGGVSIGC 525
           Y+ S+T TC  G   I C
Sbjct: 3   YVDSYTCTCPLGFSGINC 20


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,383
Number of Sequences: 336
Number of extensions: 2741
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)