Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l18f
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    27   2.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   4.9  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.5  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   8.6  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   8.6  

>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 384 SIERDGQYKEQTHKRVIGYVMAYSVG 461
           S+E+DG  K   H RV+G    Y+VG
Sbjct: 411 SLEKDGGVKVDEHCRVLGAEDVYAVG 436


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 573 ITSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNT 448
           I   G  VKA + +T  + T + P+      PQ T   P+ +
Sbjct: 355 IAMNGSSVKASNISTEKSKTIAKPKPAKELSPQATLNSPIQS 396


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 575 FLRSSISWYYNW 610
           F+   I+WYYNW
Sbjct: 313 FVNKGINWYYNW 324


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 188 NFNLYQFVTIVVRQQYI*YRKAIKLSYYCF 277
           +F LY+  + +    Y+ + K I LSY CF
Sbjct: 122 DFVLYKLSSAMASLHYLKFVKIIALSYICF 151


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 420  HKRVIGYVMAYSVGLYVLFAVLYYYMYVGRSQYWLHSL 533
            H   I     Y+V    +++  ++  Y  ++ YWLHS+
Sbjct: 1763 HPSSIALHFVYNVDKENIYSYKFFSEYSIKASYWLHSI 1800


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 432 IGYVMAYSVGLYVLFAVLYYYMYVGRSQYWLHSLLYASPLLV 557
           +G+    S+G  +    L+ +MYV   Q+  + ++  +P L+
Sbjct: 454 VGWNFVSSIGSVISILSLFLFMYVMYDQFTSNRVVKTNPYLI 495


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 543 RHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 445
           +HT++NAT   + P T S+  P ++ +   +TP
Sbjct: 408 QHTSSNATKHSAPPVTKSAPFPVVSPLQLNHTP 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,908
Number of Sequences: 5004
Number of extensions: 43101
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)