Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l18f
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350...    29   2.2  
04_04_1550 - 34332948-34335986                                         28   5.1  
10_08_0383 - 17424194-17425567                                         27   8.9  
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915...    27   8.9  
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808...    27   8.9  
05_03_0042 - 7675244-7675846,7675946-7676101,7676444-7676511,768...    27   8.9  

>01_01_0475 +
           3500385-3500880,3501078-3501154,3501851-3502019,
           3502385-3502473,3502601-3502765,3502841-3502918,
           3503087-3503190,3503317-3503422
          Length = 427

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 90  KNTDLKRSGDM*LKLKIIEYFLILYKLIL-VEVIISIYINSSP*LCASSIFSTGKLLNYL 266
           K    +R G M   L ++EYFL+LY+ +L   V    ++N       SS+ +TG  L + 
Sbjct: 270 KGRSYRRQGQM---LTVVEYFLLLYRALLPAPVWYRFFLNKEYGSLFSSL-TTGLYLTFK 325

Query: 267 IT 272
           +T
Sbjct: 326 LT 327


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +3

Query: 357 LERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLF---AVLYYYMYVGRSQYWLH 527
           ++RL  D   IER+ Q + +T  R     +    G   +     ++Y YM  G   YWLH
Sbjct: 762 IKRLSGDYSQIEREFQAEVETLSRAQHDNLVLLEGYCKIGNDRLLIYAYMENGSLDYWLH 821

Query: 528 SLLYASPLL 554
                  LL
Sbjct: 822 ERADGGALL 830


>10_08_0383 - 17424194-17425567
          Length = 457

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 429 VIGYVMAYSVGLYVLFAVLYYYMYVGRSQYWLH 527
           ++GY+  +SV L  +FA +      GR + W H
Sbjct: 224 ILGYITVHSVALGTVFASVAGQHLQGRPRRWFH 256


>09_04_0484 +
           17990020-17990488,17990930-17991009,17991122-17991586,
           17994670-17994756,17994887-17995018,17995102-17995293,
           17995409-17995495,17995621-17996295
          Length = 728

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 465 YVLFAVLYYYMYVGRSQYWLHSLLYASPLLVCPCL*YSYGHQYPGI 602
           +VL    +  MY     YWL   +Y +  L    + Y  GH Y  I
Sbjct: 429 WVLTKRSFVNMYRDLGYYWLRFAIYVALCLCVGTIYYDVGHSYGSI 474


>09_04_0483 +
           17979566-17980019,17980242-17980321,17980431-17980895,
           17981460-17981597,17982574-17982660,17982781-17982909,
           17983034-17983225,17983393-17983479,17983707-17984378
          Length = 767

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 465 YVLFAVLYYYMYVGRSQYWLHSLLYASPLLVCPCL*YSYGHQYPGI 602
           +VL    +  MY     YWL   +Y +  L    + Y+ GH Y  I
Sbjct: 469 WVLTKRSFVNMYRDLGYYWLRFAIYIALCLCVGTIYYNIGHSYGSI 514


>05_03_0042 -
           7675244-7675846,7675946-7676101,7676444-7676511,
           7680128-7680383
          Length = 360

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 528 NATNTDSSPRTCSSKGPQITRID 460
           N T T +SP TC ++ P + R++
Sbjct: 250 NRTGTATSPATCLARAPAVARVE 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,717,055
Number of Sequences: 37544
Number of extensions: 235406
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)