Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l18f
         (613 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060779-1|AAL28327.1|  387|Drosophila melanogaster GH24644p pro...    50   3e-06
AE013599-672|AAF59071.1|  387|Drosophila melanogaster CG8735-PA ...    50   3e-06
AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.       32   0.53 
AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-P...    29   4.9  
M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.         28   8.6  
M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein ( D.me...    28   8.6  

>AY060779-1|AAL28327.1|  387|Drosophila melanogaster GH24644p
           protein.
          Length = 387

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/86 (26%), Positives = 49/86 (56%)
 Frame = +3

Query: 306 MGLIISRFRRKKTTTEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVL 485
           MG ++S+ R++K+T  +LE L+  I+++E+     E+  +R +   + +++G Y++   L
Sbjct: 1   MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFTIGAYIVGFGL 60

Query: 486 YYYMYVGRSQYWLHSLLYASPLLVCP 563
           ++Y Y   +       +Y  PLL+ P
Sbjct: 61  WWYFYFPPTMQ--ECFMYLVPLLLFP 84


>AE013599-672|AAF59071.1|  387|Drosophila melanogaster CG8735-PA
           protein.
          Length = 387

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/86 (26%), Positives = 49/86 (56%)
 Frame = +3

Query: 306 MGLIISRFRRKKTTTEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVL 485
           MG ++S+ R++K+T  +LE L+  I+++E+     E+  +R +   + +++G Y++   L
Sbjct: 1   MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFTIGAYIVGFGL 60

Query: 486 YYYMYVGRSQYWLHSLLYASPLLVCP 563
           ++Y Y   +       +Y  PLL+ P
Sbjct: 61  WWYFYFPPTMQ--ECFMYLVPLLLFP 84


>AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.
          Length = 2360

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +3

Query: 348  TEILERLENDIKSIERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVLYYYMYVGRSQYWLH 527
            TE  ERL N+IK ++ + Q  +  H   I       + L ++  ++ Y++     Q  + 
Sbjct: 2290 TEEFERLNNEIKFMKENHQKLKDLHFHHISGHAGLIIALILMIVLIIYFIRKCAVQQRMQ 2349

Query: 528  SLLYASPLLV 557
            ++ +A PL V
Sbjct: 2350 AITFAGPLPV 2359


>AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-PA
            protein.
          Length = 1833

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 312  LIISRFRRKKTTTEIL-ERLENDIKSIERDGQYKEQTHKRVIG 437
            L+ SR    K  TE++ ER  N+IK  E   +  E   +RVIG
Sbjct: 1337 LVESRLESSKIKTELVSERSANEIKISEMQSKLNEFEEERVIG 1379


>M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.
          Length = 2483

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 570  TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP*R 439
            T    PV A  ++T++  + SSP  C  +   +    PLN P R
Sbjct: 2423 TIPASPVPAETSSTSSAKSTSSPSLCQEEEDAVDPERPLNWPPR 2466


>M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein (
            D.melanogaster pecanexgene, exons 1 (partial) and 2. ).
          Length = 1938

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 570  TSTGKPVKARHTATNATNTDSSPRTCSSKGPQITRIDPLNTP*R 439
            T    PV A  ++T++  + SSP  C  +   +    PLN P R
Sbjct: 1878 TIPASPVPAETSSTSSAKSTSSPSLCQEEEDAVDPERPLNWPPR 1921


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,695,957
Number of Sequences: 53049
Number of extensions: 431835
Number of successful extensions: 939
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)