Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l18f
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-11|AAC19247.1|  106|Caenorhabditis elegans Downstream o...    29   2.0  
Z81530-2|CAB04306.1|  359|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL021492-1|CAA16377.1|  179|Caenorhabditis elegans Hypothetical ...    28   6.0  

>AF068709-11|AAC19247.1|  106|Caenorhabditis elegans Downstream of
           daf-16 (regulatedby daf-16) protein 3 protein.
          Length = 106

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 390 ERDGQYKEQTHKRVIGYVMAYSVGLYVLFAVLYY 491
           +R   Y  Q  K+ IGYV+  +V +++LFA   Y
Sbjct: 71  QRPTNYIHQDSKQFIGYVLLIAVVIFLLFAACKY 104


>Z81530-2|CAB04306.1|  359|Caenorhabditis elegans Hypothetical
           protein F36D1.2 protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 438 YVMAYSVGLYV--LFAVLYYYMYVGRSQYWLHSLLYAS 545
           +V+A  VG+ V  +FA ++   Y   S+YW+  L++ S
Sbjct: 119 FVLATPVGILVERIFATVFVKDYEKESRYWIFGLIFFS 156


>AL021492-1|CAA16377.1|  179|Caenorhabditis elegans Hypothetical
           protein Y45F10D.2 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 570 TSTGKPVKARHTATNATNTDSSPRTCSSKGP 478
           +ST  PV+ +  A + T T +SP + SS  P
Sbjct: 111 SSTSMPVRQKRQAVSTTTTTASPMSTSSPTP 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,580,616
Number of Sequences: 27780
Number of extensions: 236331
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)