Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l17f
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.17
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.53
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 3.7
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 3.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 4.9
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 4.9
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 6.5
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 6.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 6.5
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 8.6
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.17
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 550 QVLFVFGGHDLEVYSVVFQHGGK 482
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.53
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 167 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 310
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 134 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 250
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 583 SSLEPFRVIELQVLFVFGGHDLEVYSVVFQ 494
SS+ +RV + L+ GH L +YSV+++
Sbjct: 527 SSIRIWRVSTGECLYHLRGHSLRIYSVLYE 556
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 523 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 422
DLE +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 371 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 463
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -1
Query: 270 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 91
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 90 EASAHTARTKA 58
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 6.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -1
Query: 228 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 67
+LI SP S S ++ V S M L+Y+ S + +S+ A + L+ + T
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343
Query: 66 TKANKVSLI 40
+ N VSLI
Sbjct: 344 FQENVVSLI 352
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 353 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 532
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 533 EDKQYLK 553
+ ++K
Sbjct: 202 DGFDFIK 208
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 421 VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 305
V+L+ + G + + L LL +D +++ +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 228 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 112
SL+ S FFS YSE + + + IYS S S S+
Sbjct: 6 SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,759
Number of Sequences: 5004
Number of extensions: 53278
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -