Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l17f
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5) 30 1.7
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13) 29 3.0
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1) 29 3.9
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 28 5.2
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 5.2
SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19) 28 6.9
SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6) 28 6.9
SB_12810| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 27 9.1
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3) 27 9.1
SB_29315| Best HMM Match : Herpes_UL21 (HMM E-Value=0.75) 27 9.1
>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
Length = 260
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 285 W*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 151
W + +F++ SI + A+L F F H+ AV+YS T
Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 164 YETAIAKCSEYLKEK--KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 331
Y + I K E+ KEK KG+ K R E GKR A +D E +K +FP
Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318
>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
Length = 618
Score = 29.1 bits (62), Expect = 3.0
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = -1
Query: 555 SFRYCLSSVDMILKYTL-LFSN----TGVNFQE--TFLLVLSLESPNAILLWFCWSINLR 397
S+ C +I Y + L SN TGV F E + L L S +++ +++ ++ LR
Sbjct: 491 SYLVCFGCPPVISSYNIHLGSNEEQTTGVQFDEFAVYCKPLELASVDSMYIFYKGALGLR 550
Query: 396 A*WSLLFMSLTVCSVKITLNWMGK*DL 316
A ++LLF T +L + G DL
Sbjct: 551 ANYTLLFPDKTWSYYWTSLEYSGLLDL 577
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 438 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCP 530
S++P + R S GSL P +T+ TSRS P
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRSTP 209
>SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1)
Length = 432
Score = 28.7 bits (61), Expect = 3.9
Identities = 27/117 (23%), Positives = 51/117 (43%)
Frame = +1
Query: 202 GKEGRGYQGSREASDRKRQEEHHGLRLPVMDKGWKGNRQILLPHPV*SDLHRADCQAHKQ 381
G+ R G RE SDR+++ E R D+G G+R+ R D AH
Sbjct: 151 GESSRIRSGDREKSDREKEREKERRRRRHEDEG-SGDRR----------RERRDKDAHDP 199
Query: 382 KGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSILQDHVHRRQTVPE 552
+ P R + D K ++ ++ ++S L+ R+ +++ L + + + + E
Sbjct: 200 EDPKRREKDDKKKSRERSKG--DEEHTKDSKLDEEDRIRRREKELLETLKQEEEAVE 254
>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +1
Query: 346 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSILQDH 525
DLH + Q +Q G + + + QQ ++ Q+Q QQ+ L + + + L
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQLQKKQQKQSSMEEKLSSE 617
Query: 526 VHR 534
+ +
Sbjct: 618 IEK 620
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +1
Query: 424 QQNCIR*LQRQNQQESLLEVYPRVGKQQSILQDHVHRRQTVPEAR 558
QQ C LQR +S LE YP GK L +H RQ V + R
Sbjct: 925 QQMCASDLQRLPYCQSQLEKYPGQGKLVPCLLEH---RQNVTDTR 966
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 194 YLKEKKGEVIKEAVKRLIENGKRNTMDFAY 283
+ +E+ GE EA KRLI+ GK+ M Y
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFLLY 705
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
P TK PP K T Y R CPP T
Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLT 166
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
P TK PP K T Y R CPP T
Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLT 180
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
P TK PP K T Y R CPP T
Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLT 194
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
P TK PP K T Y R CPP T
Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLT 208
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 429 KLHSVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
K P TK PP K T Y R CPP T
Sbjct: 46 KTRRCNPLTKGNYYRKRRCPPLTKCTNYRKRRCPPLT 82
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
P TK PP K T Y R CPP T
Sbjct: 220 PLTKCTYYRKRRCPPLTKCTNYRKRRCPPLT 250
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
P TK PP + T Y R CPP T
Sbjct: 290 PLTKRTNYRKKRYPPLTRCTNYRKRRCPPLT 320
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
P TK PP K T Y R CPP T
Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLT 219
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
P TK PP K T Y R CPP T
Sbjct: 147 PLTKCTNYLKRRCPPLTKCTNYRKRRCPPLT 177
>SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
Length = 291
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 447 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
P TK PP K T Y R CPP T
Sbjct: 254 PLTKCTNYLKRRCPPLTKCTNYRKRRCPPLT 284
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 539
++P TK PP + T Y R CPP T
Sbjct: 1 MSPLTKRTYYRKKRYPPLTRCTNYRKRRCPPLT 33
>SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6)
Length = 261
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 444 TPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTN 542
+PKT P WKT+ T R PKT+
Sbjct: 41 SPKTSPKTSPKTGRKTSWKTSTKTGRKTSPKTS 73
>SB_12810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 546
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +2
Query: 164 YETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ---LWTKDGKEIVKSYFPI 334
Y + KC Y+ + +G ++ + + KR M + LWT ++I K Y
Sbjct: 456 YPAGLTKCLSYVADDRGRALRLVLTKT--EAKRIPMLNRPEEGFLWTSTQQQITKGYESA 513
Query: 335 QFRVIFTEQTVKLI 376
R+ + T +++
Sbjct: 514 HIRLARNDSTTRIV 527
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +2
Query: 158 GEYETAIAKCSEYLKEKKGEVIKE-AVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPI 334
G ++ A +K+K +VI A+K + ++F + WT ++ P+
Sbjct: 402 GTFKKAKRVIKHAVKDKSSDVIDRWAIKEALA---LQPVEFGGRPWTVSFDLALRGERPL 458
Query: 335 QFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 454
F + VKL K H ALK+ Q+ + ++ ++++
Sbjct: 459 VFEDY--GRHVKLHRKMGHRALKVYSQKKYQQVIIQEAEE 496
>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
Length = 736
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 9/43 (20%)
Frame = -3
Query: 571 PFRVIELQVLFVFGGHDL-----EVY----SVVFQHGGKLPGD 470
P+R +E++ LF FG H + VY ++++ G LPGD
Sbjct: 238 PYRPLEVERLFAFGEHSMVFLRFNVYFTTRRILYELGAPLPGD 280
>SB_29315| Best HMM Match : Herpes_UL21 (HMM E-Value=0.75)
Length = 814
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 9/43 (20%)
Frame = -3
Query: 571 PFRVIELQVLFVFGGHDL-----EVY----SVVFQHGGKLPGD 470
P+R +E++ LF FG H + VY ++++ G LPGD
Sbjct: 87 PYRPLEVERLFAFGEHSMGFLRFHVYFTTRRILYELGAPLPGD 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,245,403
Number of Sequences: 59808
Number of extensions: 416462
Number of successful extensions: 1544
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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