Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l12f
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.48 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.0  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   3.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   4.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 467 TSSPLAARGAEIQSSIKPSSRLTLSGTAIAS 559
           + + L   GA++ + +   +RLTLSG AIAS
Sbjct: 391 SDNKLRTVGAQLFNGLFVLNRLTLSGNAIAS 421


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 200 TLSATPAVSQSMEPSSTSTTTVS 268
           +L  T   S + EPS+T++TT+S
Sbjct: 377 SLVPTTTASPTTEPSTTTSTTIS 399


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 215 PAVSQSMEPSSTSTTTVSIACPASPNITARGAMDAATPSL 334
           PA + +   ++T+TTT +     +PN T   +     P +
Sbjct: 654 PATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQV 693



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 194 PSTLSATPAVSQSMEPSSTSTTTV 265
           P+T SA  A S +    +T TTT+
Sbjct: 238 PATPSAVVATSNATAAMTTGTTTI 261


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 336 PCDPSSWRIVARSPLRLR 389
           PCDP   R+ + +PL LR
Sbjct: 60  PCDPVGRRLKSLAPLVLR 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 480 SGELVCIAIGAIGTAS 433
           +GE VC A  A GTAS
Sbjct: 653 AGEYVCTAENAAGTAS 668


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 336 PCDPSSWRIVARSPLRLR 389
           PCDP   R+ + +PL LR
Sbjct: 60  PCDPVGRRLKSLAPLVLR 77


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 571 CRNPVTDSTFSVMENXPLCGNALN 642
           CRN +  + FSV+     C +A+N
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAIN 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 571 CRNPVTDSTFSVMENXPLCGNALN 642
           CRN +  + FSV+     C +A+N
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAIN 506


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 387 RWMQEGAWRW 416
           RW+Q+GA+ W
Sbjct: 171 RWVQQGAFGW 180


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 48  TQHNTKVKKYKNNHRHNHVN 107
           T HN    KY  N+++N+ N
Sbjct: 89  TIHNNNNYKYNYNNKYNYNN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,741
Number of Sequences: 438
Number of extensions: 3852
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)