Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l11f
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.43
03_06_0333 - 33204345-33204803 30 1.0
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 1.7
05_01_0545 - 4756266-4757510 29 1.7
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 2.3
08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36... 29 3.1
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 3.1
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 3.1
12_02_1275 - 27482784-27483272 28 4.0
06_03_0685 - 23499779-23500204 28 4.0
04_03_0489 + 16503325-16503747,16503916-16503978 28 4.0
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 4.0
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 28 4.0
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 27 7.1
08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290... 27 7.1
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 27 7.1
03_05_0057 + 20350971-20351405 27 7.1
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 27 7.1
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 27 7.1
01_01_1225 - 9894899-9895333 27 7.1
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 27 9.3
06_03_1310 + 29238644-29240260 27 9.3
05_05_0256 - 23647736-23648947 27 9.3
05_03_0408 + 13601576-13601748,13601795-13602104,13602597-136028... 27 9.3
01_06_1425 - 37273311-37273697 27 9.3
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.43
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 147 WKWCGLRRDQTGREG 191
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>03_06_0333 - 33204345-33204803
Length = 152
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +1
Query: 265 CFSLCLGAGPLWWS*CPCSRLCTARRGDRRGCEPRYPGHPQPRRQSR 405
C SL G L C C+R C R RG PR+ P Q R
Sbjct: 57 CCSLLDGLVDLDAVVCLCTRPCLLLRAQHRGARPRWAASPPAATQRR 103
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 121 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 285
SSS S+Y N +G +T +++ SG +S S +S+ D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>05_01_0545 - 4756266-4757510
Length = 414
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 316 CSRLCTARRGDRRGCEPRYPGHPQPRRQSRLAKCP 420
C+R+ A GDRR C P P PR+ + P
Sbjct: 332 CARVVPAADGDRRNCLPNRPYQRTPRQCAAFYAAP 366
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 242 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 150
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>08_01_0052 +
361505-361969,362270-362348,362816-362880,363069-363236,
363731-364171
Length = 405
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 313 PCSRLCTARRGDRRGCEPRYPGHPQPRRQSRLAKCPAMVKLQLF 444
P +R+ A + EP PG Q ++Q R +C +V+ +L+
Sbjct: 316 PVARIGEAMQKQSISSEPENPGQGQGKQQRRCKECDVLVEDKLY 359
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = -2
Query: 355 PAGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPT-ELSACCRERSETPRHRNKPSRP 179
P H R IR + + P R+ R P + + R RS PR R P R
Sbjct: 297 PIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPRR 356
Query: 178 VWS 170
+WS
Sbjct: 357 MWS 359
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 340 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRER 218
SG + S+ IRT+ RP T + R PK +SA R +
Sbjct: 26 SGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNK 66
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 144 QWKWCGLRRDQTGREG 191
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 164 PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAP 289
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 224 PAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAH 322
PAA+A L RLRTP+ + C G P V H
Sbjct: 49 PAAAACLRRLRTPATAACLRRAGNPRPPPVSPH 81
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 479 LGHHGDSRRCWPKSWSLTIAGHLASRD 399
L D + WP W ++ AGH+++ D
Sbjct: 76 LQRRADCKDTWPGQWDISSAGHISAGD 102
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 334 RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSAC 230
R RA S+D R T + RP T R P P AC
Sbjct: 1024 RRRAPSQDWRYTPDVPRPRTRGRRRGPSPAIQKAC 1058
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 144 QWKWCGLRRDQTGREG 191
+W W GLRR +TGR G
Sbjct: 558 RWVWRGLRRIKTGRRG 573
>08_01_0322 -
2898272-2898475,2898548-2898730,2898817-2899702,
2902070-2902374
Length = 525
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 295 LWWS*CPCSRLCTARRGDRRGCEPRYPGHPQPRRQSRLAKCP 420
+WWS CP R C+ R G R PG P R+ K P
Sbjct: 28 VWWSHCPPHR-CSCAAPPRGG---RVPGWSSPERRRGRRKRP 65
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 340 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRER 218
SG + ++ IRT+ RP T + +R PK +S R +
Sbjct: 36 SGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNK 76
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 214 LSAPGSKRSALSASDAECFSLCLGAGP 294
LS+P + R AL D EC S AGP
Sbjct: 74 LSSPKAAREALKVHDPECCSRSPSAGP 100
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 260 PSVSRCAWAPGLCGGPDVP 316
P V+ +WAP CGG VP
Sbjct: 85 PPVAALSWAPARCGGGAVP 103
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 144 QWKWCGLRRDQTGREG 191
+W+W GLRR + GR G
Sbjct: 64 RWEWHGLRRTKAGRRG 79
>01_01_1225 - 9894899-9895333
Length = 144
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 332 VQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGA 219
V + + H+ H R P+P + K S ++A A R LP A
Sbjct: 55 VVAAHRRHRRHRRSPSPPDA-KRSTADATVAPRFLPAA 91
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 326 SREQGHQDHHRGPAPRHSEKHSASEADRAERL 231
S +GH +HHR + A E DR + L
Sbjct: 50 SSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81
>06_03_1310 + 29238644-29240260
Length = 538
Score = 27.1 bits (57), Expect = 9.3
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Frame = -2
Query: 355 PAGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRH----RNKP 188
PA P +C A + ++A+ T TRRP + RS P H R P
Sbjct: 339 PAQRPPAQCAAAAAHPFDCSKAQCQATPPTTRRPGGR--TPLAPHRSPLPHHMPPRRTPP 396
Query: 187 SRPVWSRRSPHH 152
+ P S +P H
Sbjct: 397 TPPPPSSPTPSH 408
>05_05_0256 - 23647736-23648947
Length = 403
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 304 TTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSR 167
+TT +R A + P T S C R T R+KP R R
Sbjct: 346 STTSSRSSSMAPDGATPAETAASGCWGRRRRTTSCRSKPRRATHRR 391
>05_03_0408 +
13601576-13601748,13601795-13602104,13602597-13602834,
13603014-13603364,13603457-13603542,13603685-13603759,
13604241-13604542,13605359-13605622,13606032-13606806
Length = 857
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 158 WTPSRPNRSRRFIPVTG 208
+ P+RP R RRF+P+ G
Sbjct: 716 YPPNRPTRCRRFVPLPG 732
>01_06_1425 - 37273311-37273697
Length = 128
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 141 LQWKWCGLRRDQTGREGL-FR*RGVSERSRQQALSS 245
L W+WC LRR + GL R R ++ QA S+
Sbjct: 73 LTWRWCKLRRTEDRVRGLQARLRQLAAAEESQAAST 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,845
Number of Sequences: 37544
Number of extensions: 265554
Number of successful extensions: 1040
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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