Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l11f
         (527 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   4.8  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.3  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.3  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    23   6.3  
AF513634-1|AAM53606.1|  216|Anopheles gambiae glutathione S-tran...    23   6.3  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   8.4  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 329 QSREQGHQDHHRGPAPRHSEKHSASEADRAERLLP 225
           Q ++Q H  HH     +   K++    + +ER+LP
Sbjct: 779 QQQQQQHHHHHLQQQQQIVGKNTLYSRNSSERMLP 813


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 278 HSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTE 162
           HSE    S +  A+  +P  ++     +  FS  + STE
Sbjct: 431 HSESEELSMSTAADTAVPSGIKSPAFKQPAFSHSVCSTE 469


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 278 HSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTE 162
           HSE    S +  A+  +P  ++     +  FS  + STE
Sbjct: 431 HSESEELSMSTAADTAVPSGIKSPAFKQPAFSHSVCSTE 469


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -1

Query: 320 EQGH-QDHHRGPAPRHSEKHSASEA 249
           + GH + HH+     H   HSA EA
Sbjct: 223 DSGHMRSHHQHYTANHQNGHSAPEA 247


>AF513634-1|AAM53606.1|  216|Anopheles gambiae glutathione
           S-transferase D5 protein.
          Length = 216

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 399 IATC*VPCYGQAPALWPAXPRV-SMMAKRL 485
           IA   V  YGQ  AL+P  P+V S++ +RL
Sbjct: 68  IAIYLVEKYGQDDALYPKDPKVRSIVNQRL 97


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 311 HQDHHRGPAPRHSEKHSAS 255
           HQ HH+ P   H ++H  S
Sbjct: 119 HQHHHQHPHLPHVQQHHPS 137


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,782
Number of Sequences: 2352
Number of extensions: 8547
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)