Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l11f
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical p...    30   0.89 
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    28   3.6  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AC084197-33|AAN63423.2|  352|Caenorhabditis elegans Him-three pa...    27   8.3  

>Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical
           protein K10C8.3b protein.
          Length = 141

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -2

Query: 328 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 152
           R  S+ ++  +  +RP + R ++ P P       R RS +   + K +  V     P+H
Sbjct: 17  RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 311 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 147
           +  HH+ P P H   H   +  +  E++   ++ DAP    T  T LV  +S   P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 299 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 195
           H GP     E+H  +E D  E LL G L D P  +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 304 TTTEARRPGTARNTRRPKPTELSACCRERSETP 206
           TTT  +RP T   T  P+P E     +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 322 VSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSET 209
           V +++RT+   RRP T    R P+    SA  R++ ++
Sbjct: 26  VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDS 63


>AC084197-33|AAN63423.2|  352|Caenorhabditis elegans Him-three
           paralog protein 2 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
 Frame = -1

Query: 476 GHHGDSRRCWPKSWS------LTIAGHL 411
           GHH    +CW KS S      LT+ GHL
Sbjct: 238 GHHAAHMQCWSKSMSDSYAAELTLKGHL 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,340,535
Number of Sequences: 27780
Number of extensions: 196551
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)