Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l10r
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z84574-3|CAB06540.2|  172|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   2.0  

>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -2

Query: 744 SFTIASSLPITTVRLKEQAFIRGEEERSHHKCSEQTDTKQQDE 616
           SFT+ASS P T +R+++ +     +E+   + S++ D +++DE
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERSKR-DRRKKDE 326


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -2

Query: 744  SFTIASSLPITTVRLKEQAFIRGEEERSHHKCSEQTDTKQQDE 616
            SFT+ASS P T +R+++ +     +E+   + S++ D +++DE
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERSKR-DRRKKDE 1091


>Z84574-3|CAB06540.2|  172|Caenorhabditis elegans Hypothetical
           protein F33E2.4 protein.
          Length = 172

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 747 SSFTIASSLPITTVRLKEQAFIRGEEERSHHKCSEQTDTKQQDE 616
           +SFT A++ P+TTV ++E+     EEE +     E T T  +D+
Sbjct: 27  TSFTEATTEPLTTVTMREKPTTPVEEEPTTPVDEEPTTTMVEDD 70


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 662 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 486
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 662 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 486
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,985,716
Number of Sequences: 27780
Number of extensions: 326552
Number of successful extensions: 1035
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)