Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l09r
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy...    28   0.72 
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   5.1  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   8.9  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.9  

>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 102

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 230 RFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHI 132
           + YTD++           V+S+ FIASVF+LHI
Sbjct: 59  KLYTDEASGFKVDPVVVMVLSVGFIASVFLLHI 91


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 322 AVRGPAEAFVGDLLPDPTEVALGD 393
           ++RG  E  VGDL  D  + +LGD
Sbjct: 269 SLRGDVEVVVGDLERDGRDTSLGD 292


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 360 TPRSYRGSTRRLRH 401
           TP+SYR S +R++H
Sbjct: 80  TPKSYRKSVKRIKH 93


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 103 NYYALVYFPQMCNMNTDAINRRD 171
           ++  L + P++C ++ DAIN  D
Sbjct: 268 DHIGLKFLPRLCELHPDAINSLD 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,913
Number of Sequences: 5004
Number of extensions: 33343
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)