Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l09r
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical ...    62   2e-10
Z83105-1|CAB05480.1|  335|Caenorhabditis elegans Hypothetical pr...    31   0.65 

>AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.9 protein.
          Length = 81

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 27/45 (60%), Positives = 34/45 (75%)
 Frame = -1

Query: 245 SGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 111
           +GG+WRFYT+DS           VMSL+FIASVF+LHIWGK+TR+
Sbjct: 35  NGGLWRFYTEDSTGLKIGPVPVLVMSLVFIASVFVLHIWGKFTRS 79


>Z83105-1|CAB05480.1|  335|Caenorhabditis elegans Hypothetical
           protein F14H3.1 protein.
          Length = 335

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +2

Query: 221 YRTSTFLQNQHQCFGFWLQL***LIFVD-GLYY----HWLFVGQQKLLWVIYSQILQR*H 385
           YR S F Q  HQ  GFW  L   +  +  G+ +      L  G QK+   IY Q ++  H
Sbjct: 112 YRYSVFTQISHQKLGFWALLGLFIFLISHGIVWSSVCELLLYGDQKVADYIYKQFMKDYH 171

Query: 386 SEIEAFLF 409
            +     F
Sbjct: 172 VDSHGLFF 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,179,420
Number of Sequences: 27780
Number of extensions: 184234
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)