Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l09f
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   3.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.3  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 261 WCWFWRNVEVLY 296
           WC  WR+++VL+
Sbjct: 118 WCDVWRSLDVLF 129


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 444 NNMLYCILRFKLLCSSIF 391
           NN+L   +RFKL+   IF
Sbjct: 55  NNLLNAYVRFKLVTDCIF 72


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +3

Query: 252 PKHWCWFWRNVEVLY 296
           P H+ W +++  +LY
Sbjct: 139 PNHYLWLYKDKTILY 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,362
Number of Sequences: 438
Number of extensions: 2524
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)