Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l08f
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   3.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   6.5  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    25   8.7  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 265 DEHFATLPIKTHKIDLIASL--PENFDPRDKWPDCPTLNEVRDQGSCGSCWAFGA 423
           +E     P+ ++  D I +L  P++ D    WP    L  V   GS   C  FG+
Sbjct: 37  EESLKKYPVISNPQDFIVTLDGPDDPDLAVNWPLAKKLRNVAVMGSACLCAGFGS 91


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 142 HPLSDEFINTINLKQNSWKAGRN 210
           +P+SD F+N+  ++++ W+   N
Sbjct: 647 YPISDSFVNSATVEKHIWERKEN 669


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +1

Query: 349 KWPDCPTLNEVRDQGSCGSCWAFGAVEAMTDRVCTYSNGTKHFH 480
           KWPD   L  V D  S   CW        T       N     H
Sbjct: 51  KWPDKQRLERVLDVKSDEDCWVVATAYMTTALKPNVMNDVTQLH 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,024
Number of Sequences: 5004
Number of extensions: 56111
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)