Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l03r
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    52   6e-08
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   4.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   6.3  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   6.3  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   8.3  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 14/231 (6%)
 Frame = -3

Query: 719 ADQVEAELNYAMDVYELNRRVNSSESIVGXWATGNEVTNHSSVIHEYYSRECREP----- 555
           ++QVE E+ Y   +Y L+ + N  E +VG +AT  ++   S++I   Y+    EP     
Sbjct: 76  SEQVEVEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPL 134

Query: 554 -------VHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGL 399
                  VH+T++T ++   + ++ YV  P+G+       C F P   T+   E    GL
Sbjct: 135 GTYPHPCVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGL 193

Query: 398 QVCQKTXXXXXXXXXXXXXXSDLAQVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 219
           +                   +DL Q+                                  
Sbjct: 194 KA---VAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDGSSPANVAVGR 250

Query: 218 LLQLAHS-APDLAKDTFSDAFASSVKDLLMVVTLAQLIKTQLQLNEKLTLL 69
            L    S  P +    F   F+S ++D+L+VV LA  ++TQ+ +  +L LL
Sbjct: 251 YLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVVYLANTLRTQVDIASRLNLL 301


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 369 STRHSLLAHL*TYNLRFIACESDI--YRSEHATLLSIWHSQWYTNICT*THSTSSQRSVQ 542
           ST HSLL+++ +   + IACE     YR +    +  W +  +   C   ++  +Q   Q
Sbjct: 307 STIHSLLSYVFSRQTQNIACEPMYIDYRKDETEAIIRWKTPLHAETC--INAFRTQERKQ 364

Query: 543 SNMDRLTA 566
           ++ D + A
Sbjct: 365 NSHDDIRA 372


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 447 SEHATLLSIWHSQWYTNICT*THSTSSQRSVQSNMDRLTAFTGI 578
           S  A +L  +   W+ N+      T S+RS+ +N D +T+F+ +
Sbjct: 410 SAKARILDSFCIDWHLNV-----QTMSERSILTNRDFITSFSAV 448


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 215 LQLAHSAPDLAKDTFSDAFASSVKDLLMVVTLAQL-IKTQLQLNEKLTLL 69
           LQL H     A++ F    ASS   L M   L  L + T+L  + KLT+L
Sbjct: 308 LQLLHDPQGFAEELFEKHLASSKSRLSMDQKLVVLRLLTRLVGSHKLTVL 357


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 456 HVHSCRCHSHM 424
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,598
Number of Sequences: 5004
Number of extensions: 45360
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)