Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l03f
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    26   0.26 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   5.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   7.3  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   7.3  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   9.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.7  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 406 AGWRSNGFTCICLCTIGSAKWKARLHVHSC 495
           AG  SNG  C CL T  SAK + +    SC
Sbjct: 181 AGKASNGNKCCCLRTCSSAK-RPKFENSSC 209


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +1

Query: 103 RIRTSKCRFSQSYRHLIGHERQRSGGSNQLLLRATQRTC 219
           R+   KC F   Y+H + +  +   GS          TC
Sbjct: 230 RLTCPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCDYTC 268


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +2

Query: 308 WATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRM 424
           WA G        V+   YS      V    DTSL  GR+
Sbjct: 479 WANGTLAKLSPKVLEPLYSGNLAVSVATPNDTSLVRGRL 517


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 37  RIKNGSQY*CEGPSCCFISNCGRIRTSKCRFSQSYRHL 150
           RI +G  Y C+ PS    +NC     ++C  S   +HL
Sbjct: 392 RISDGGGYICDCPSGTNGTNCEIDTINECD-SNPCKHL 428


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +3

Query: 132  TELSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*T 272
            TE   P W      WW   T S   T      ++R   TR   TS T
Sbjct: 1028 TEHMHPDWTTKPSTWWSSTTTSPWWTTT---TTRRTTTTRPTTTSTT 1071


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 385 PCYSGHFAGWRSNGFTCIC 441
           PC +G     + N F CIC
Sbjct: 76  PCENGGTCVDKINAFQCIC 94


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 427 FTCICLCTIGSAKWKARLHVH 489
           + C+    +GSA   AR++V+
Sbjct: 489 YRCVASSKVGSADHSARINVY 509


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 411 LEVEWVYVHMFVYHWEC 461
           LE    +++MFV  W+C
Sbjct: 291 LEQSRYFIYMFVSVWKC 307


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 411 LEVEWVYVHMFVYHWEC 461
           LE    +++MFV  W+C
Sbjct: 291 LEQSRYFIYMFVSVWKC 307


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 411 LEVEWVYVHMFVYHWEC 461
           LE    +++MFV  W+C
Sbjct: 291 LEQSRYFIYMFVSVWKC 307


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 411 LEVEWVYVHMFVYHWEC 461
           LE    +++MFV  W+C
Sbjct: 291 LEQSRYFIYMFVSVWKC 307


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 320 CQSPTNQQYFQR 285
           CQ+ +N +YFQR
Sbjct: 200 CQTVSNFEYFQR 211


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 320 CQSPTNQQYFQR 285
           CQ+ +N +YFQR
Sbjct: 126 CQTVSNFEYFQR 137


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 4/36 (11%), Positives = 16/36 (44%)
 Frame = +3

Query: 348 YTSIIPVNAVSLSMLLWTLRWLEVEWVYVHMFVYHW 455
           +  ++ +  ++  +      +  ++W + HM  + W
Sbjct: 371 HLQLVAIRLLNTKLQFTAKDFFNLDWTFCHMVSHKW 406


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 91  SNCGRIRTSKCRFSQSYRHLIGHERQRSGG 180
           S  GRI   KC         + H RQ  GG
Sbjct: 630 SGAGRITCEKCGNKIDTSLFVDHIRQCVGG 659


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,269
Number of Sequences: 336
Number of extensions: 3859
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)