Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l03f
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...   100   1e-22
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    71   9e-14
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   1.9  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.4  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    26   3.4  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   3.4  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   4.4  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   5.9  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score =  100 bits (240), Expect = 1e-22
 Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 15/176 (8%)
 Frame = +2

Query: 59  ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 232
           +++ + P VLF I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80

Query: 233 AELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP---------- 382
            E+ Y   +Y L+ + N  E +VGW+AT  ++   S++I   Y+    EP          
Sbjct: 81  VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPH 139

Query: 383 --VHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 541
             VH+T++T ++   + ++ YV  P+G+       C F P   T+   E    GL+
Sbjct: 140 PCVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLK 194


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 71.3 bits (167), Expect = 9e-14
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
 Frame = +2

Query: 65  VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 235
           V VHP+VL   VD+Y R       RV+G LLG ++  VV V N + +P +E         
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76

Query: 236 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 412
            + N+   + E+ +++N++E +VGW+ TG ++      I+    +    PV V +D    
Sbjct: 77  LDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPK 136

Query: 413 GGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 541
              +   AY  +     +G K    F  +  ++   E E +G++
Sbjct: 137 SVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVE 180


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 72  TFTLILRAIFNSTKTTNPETQSTS 1
           TF L++ A+FNST TT P   S+S
Sbjct: 71  TFHLVI-AVFNSTSTTLPSATSSS 93


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 107 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 232
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 43   KNGSQY*CEGPSCCFISNCGRIRTSKCRF 129
            K   Q+  + P C  IS   R   SKCR+
Sbjct: 1951 KQAPQFQSKSPECVIISTMNRSCDSKCRY 1979


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 53  LNISVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 217
           LNI ++   +V+ ++++  ++RN D H  I       +  TSD  ++ + N F +    H
Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312

Query: 218 AD 223
            D
Sbjct: 313 RD 314


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 568 STRHSLLAHL*TYNLRFIACESDI--YRSEHATLLSIWHSQWYTNICT*THSTSSQRSVQ 395
           ST HSLL+++ +   + IACE     YR +    +  W +  +   C   ++  +Q   Q
Sbjct: 307 STIHSLLSYVFSRQTQNIACEPMYIDYRKDETEAIIRWKTPLHAETC--INAFRTQERKQ 364

Query: 394 SNMDRLTA 371
           ++ D + A
Sbjct: 365 NSHDDIRA 372


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 490 SEHATLLSIWHSQWYTNICT*THSTSSQRSVQSNMDRLTAFTGI 359
           S  A +L  +   W+ N+      T S+RS+ +N D +T+F+ +
Sbjct: 410 SAKARILDSFCIDWHLNV-----QTMSERSILTNRDFITSFSAV 448


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 118 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 261
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 481 HVHSCRCHSHM 513
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,142
Number of Sequences: 5004
Number of extensions: 59135
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)