Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l03f
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 106 1e-23
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 69 2e-12
Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical ... 29 1.8
Z29121-1|CAA82387.3| 324|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81537-1|CAB04372.1| 326|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical pr... 27 7.1
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 27 7.1
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 27 7.1
AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein. 27 7.1
AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical ... 27 7.1
AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin monoox... 27 7.1
AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear recep... 27 7.1
AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear recep... 27 7.1
AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear recep... 27 7.1
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 27 7.1
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 27 7.1
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 27 7.1
AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical ... 27 7.1
Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 106 bits (254), Expect = 1e-23
Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 20/191 (10%)
Frame = +2
Query: 47 MALNISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPH 208
MA N++V VHP V +VD + RR N + +GTL+G +KG ++VTNCF +P
Sbjct: 1 MASNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPF 60
Query: 209 KEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECRE--- 379
E D +E + + + ++ + +E VGW+ T +++T+ + H+YY R E
Sbjct: 61 NESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASA 120
Query: 380 -----PVHV-TLDTSLAGG---RMGLRAYVCVPLGVPN--GKQGCMFTPVDVTLTCYEPE 526
P+ V T+DT+ +G RM +RAY+ G+P G +F P+ V L + E
Sbjct: 121 RRESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGE 180
Query: 527 IVGLQVCQKTV 559
+V +Q+ +K +
Sbjct: 181 LVAMQLIEKAL 191
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 68.9 bits (161), Expect = 2e-12
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Frame = +2
Query: 65 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 235
V VHP+VL +VD + R + RV+G LLG+ K +++ N F VP E
Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100
Query: 236 ---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTS 406
+++Y +Y + +V + E IVGW+ TG ++ + I+E R C PV V +D
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAE 160
Query: 407 LAGGRMGLRAYV 442
+ AY+
Sbjct: 161 PKNIGLPTEAYI 172
>Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical
protein F36H1.9 protein.
Length = 160
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 189 TASACHTKNMPIKSKRNLITRWMFTS 266
T ACHT M + K+N IT W +++
Sbjct: 55 TLVACHTLQMFLAEKKNTITHWKYST 80
>AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical
protein Y67H2A.6 protein.
Length = 426
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Frame = +2
Query: 65 VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCFC--VPHKEHADQ 226
V +HP+V+ Q+ + Y R +V G +LG + VE N F + +E A+
Sbjct: 14 VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEP 73
Query: 227 VEAELNYAMDVYELNRRVNSSESIVGWWATGNE 325
V + + + V ++G + G +
Sbjct: 74 VTFSTEHLLQRADQYLEVFPELQVIGLYCAGED 106
>Z29121-1|CAA82387.3| 324|Caenorhabditis elegans Hypothetical
protein ZK757.1 protein.
Length = 324
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 29 VLVELKMALNISVKVHPVVLFQIVDAYERRNADSHR 136
V + L + LN+ V ++ V Y++RN D HR
Sbjct: 177 VRISLTLGLNLFAVFINVAIYTFVKKYDKRNVDVHR 212
>Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical
protein F01D5.1 protein.
Length = 178
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 176 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 75
PLL SCP+ C+ LC + P F+ K D
Sbjct: 44 PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76
>Z81537-1|CAB04372.1| 326|Caenorhabditis elegans Hypothetical
protein F41D3.1 protein.
Length = 326
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 1 ACTLCFWVCSFGRIKNGSQY*CEGPSCCFISNCGRIRTSKCRFS 132
ACT C +F R G QY C C I + + CR+S
Sbjct: 28 ACTAC---AAFFRRSFGQQYLCNAEKKCIIMHDRKFFCRACRYS 68
>Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical
protein K08C7.5 protein.
Length = 529
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 230 RLDRHVLCVARRSSWLLPPLLCRSCP 153
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding
protein LAG-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 153 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 305
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 153 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 305
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein.
Length = 474
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 40 IKNGSQY*CEGPSCCFISNCGRIRTSKCRF 129
++N Y C +CC I R R CRF
Sbjct: 128 VQNKKVYHCSQDNCCEIDKQNRNRCQSCRF 157
>AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical
protein Y15E3A.1a protein.
Length = 474
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 40 IKNGSQY*CEGPSCCFISNCGRIRTSKCRF 129
++N Y C +CC I R R CRF
Sbjct: 128 VQNKKVYHCSQDNCCEIDKQNRNRCQSCRF 157
>AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 529
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 230 RLDRHVLCVARRSSWLLPPLLCRSCP 153
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 476
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 40 IKNGSQY*CEGPSCCFISNCGRIRTSKCRF 129
++N Y C +CC I R R CRF
Sbjct: 130 VQNKKVYHCSQDNCCEIDKQNRNRCQSCRF 159
>AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 40 IKNGSQY*CEGPSCCFISNCGRIRTSKCRF 129
++N Y C +CC I R R CRF
Sbjct: 129 VQNKKVYHCSQDNCCEIDKQNRNRCQSCRF 158
>AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 40 IKNGSQY*CEGPSCCFISNCGRIRTSKCRF 129
++N Y C +CC I R R CRF
Sbjct: 129 VQNKKVYHCSQDNCCEIDKQNRNRCQSCRF 158
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 153 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 305
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 153 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 305
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +1
Query: 439 CLCTIGSAKWKARLHVHSCRCHSH 510
C CT +W +H CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579
>AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical
protein T04D1.2 protein.
Length = 381
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 84 FYFKLWTHTNVEMQILTELSAPYWARA 164
FY +W+ T V + LT YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144
>Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical
protein K07C10.1 protein.
Length = 851
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 26 VVLVELKMALNISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVE--VTNCFC 199
V ++++ MA+ SV V + A E+ H VI ++L + VVE +T C
Sbjct: 724 VTMIDVIMAIGFSVDYSAHVCYHYYCAREQHLGSKHEVITSVLQAVGRPVVEASLTTLLC 783
Query: 200 V 202
+
Sbjct: 784 M 784
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,632
Number of Sequences: 27780
Number of extensions: 353091
Number of successful extensions: 913
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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