Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l02r
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    86   4e-18
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    83   5e-17
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    29   0.90 
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   2.1  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   2.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   8.4  

>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
 Frame = -3

Query: 533 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEG 354
           NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L    +G+ L  SE 
Sbjct: 71  NIFFAKQVINNACATQALLSVLLNHSDEIDLGTT-LSEFKDFSKTLPPELKGEALGNSEH 129

Query: 353 IINAHKELAQEG-----QTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQ 189
           I   H   A+       +    + ED V +HFI++   +   YELDG +A P+NHG  ++
Sbjct: 130 IRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYELDGLQAAPINHGSCTK 188

Query: 188 ETLLEDAAKICKEFMAR-DPNEVRFTVIALVASD*LISFLSFE 63
           E   E A  + +  +A  DP E+RF ++ ++  D   S L+ E
Sbjct: 189 EEFAEKAVSVIQARIANYDPAEIRFNLM-VICKDKKASLLTRE 230


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 82.6 bits (195), Expect = 5e-17
 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 6/200 (3%)
 Frame = -3

Query: 725 FLPKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTEENEILSKGQ 546
           +L K+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K +    IL K  
Sbjct: 15  YLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKGSR---ILPKD- 68

Query: 545 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARGKLL 369
             S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+G     R KL+
Sbjct: 69  --SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAEGSSIEERAKLI 126

Query: 368 EKSEGIINAHKELAQEGQTNTPSAED-PVNHHFISFV----QKDGALYELDGRKAFPVNH 204
           E S+ +   H   A        S ED   + HFI FV    + D   YELDGR+  PV H
Sbjct: 127 EDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYELDGRQEGPVQH 186

Query: 203 GPTSQETLLEDAAKICKEFM 144
                + L  +   + K ++
Sbjct: 187 SEIESDLLNAEVLSVIKNYI 206


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 362 SEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQET 183
           S  ++    ELA +  TNT      V   ++++V  +   + L   K F   H P+S E 
Sbjct: 126 SRALLEQFAELASK--TNTSHMIHQVYDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEA 183

Query: 182 LL 177
           L+
Sbjct: 184 LI 185


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 256 KMEHCMS*MAVKLFLSIMAQLHRKLCWKMQQKFAKN 149
           +M HC S     L   I   L R L W+ +QK A N
Sbjct: 508 RMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMN 543


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -3

Query: 353  IINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNH-GPTSQETLL 177
            +I+ + E A+E + +  + E  +  H IS   ++  ++  D     P     PT+ E ++
Sbjct: 1205 VISKYIENAKEIELDAVAREGKMVMHVISEHVENAGVHSGDATLVLPPQDLAPTTIERIV 1264

Query: 176  EDAAKICKEFMARDPNEVRF 117
            + AAKI +      P  ++F
Sbjct: 1265 DAAAKIGEALNITGPYNIQF 1284


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 299  AEDPVNHHFISFVQKDGALYELDGR 225
            AE+ V  HF+    KD  LY++D R
Sbjct: 1099 AEESVKRHFLRLWLKDNGLYDVDIR 1123


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -3

Query: 350 INAHKELAQEGQTNTPSAEDPVNHHFISFVQ 258
           ++A + L ++ +++T + E+PV+HH  S V+
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHHLKSPVR 367


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -3

Query: 464 NNTDIIELSDGHMQ-KFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDP 288
           +NT+++   +  ++ K ++  K +D +  G  L + E    +H +    GQ      +DP
Sbjct: 31  SNTNMLSTEENIVKAKAVSRKKPVDVSYAG--LARHE----SHVDTDYHGQALNTDNQDP 84

Query: 287 VNHHFISFVQKDGALYE 237
            N+   SFV K+  LYE
Sbjct: 85  KNYQARSFV-KENELYE 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,521
Number of Sequences: 5004
Number of extensions: 62992
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)