Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l02r
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.97 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.97 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   5.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 587 HKKTEENEILSKGQEVSGNIFYMKQNISNACGTIAL 480
           H+K ++  I  +    + N FY K N SN+  +  L
Sbjct: 123 HQKLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVL 158


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 531 YFLYETKYQQCMWDYSSCT 475
           YF++E+     +WD+  CT
Sbjct: 104 YFVHESLKNVLLWDFQECT 122


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 189 GNFVGRCSKNLQRIYGSRSE*STLYSNCSS 100
           GNF    S+ + +I+ + +E + L + CS+
Sbjct: 77  GNFNEHVSREIAKIFLNENEINQLITECSA 106


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 456 RIVGHTMYKSYSPTCIADIL 515
           R +G+ ++ +Y PTC+  I+
Sbjct: 242 RRLGYYLFHTYIPTCLIVIM 261


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 609 WEK*HYRKHRARYPRKRFRIK 671
           W+K   +K  ++ PR++F  K
Sbjct: 427 WKKGRDKKSTSKKPRRKFHFK 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,104
Number of Sequences: 438
Number of extensions: 4031
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)