Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l02f
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 101 3e-22
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 44 1e-04
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 43 2e-04
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 37 0.011
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 35 0.043
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 30 1.6
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 3.7
05_01_0546 - 4769565-4769612,4769873-4770037,4770192-4770200,477... 28 6.5
02_03_0356 + 18073794-18074052,18074054-18074163 27 8.5
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 101 bits (243), Expect = 3e-22
Identities = 49/128 (38%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = +1
Query: 214 VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHK 393
+PLE+NP+V+N+F++ LGVP + DV GLD E L+ VP+PVL+V+LL+P D +
Sbjct: 6 LPLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYP-QDRKKESV 64
Query: 394 KTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEA 570
+ + + SK ++S N+++ KQ I NACGT+ ++H++ N I+L +G + +F +
Sbjct: 65 ASPSSTVESK--KLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQT 122
Query: 571 KGLDATAR 594
+D R
Sbjct: 123 ADMDPAQR 130
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Frame = +1
Query: 247 KFLQKLGVPNKW-NIVDVMGLDPETLSWVPRPVLSVMLLFP------------------I 369
+ + LGVP DV LD + L VP+PVL+V+ FP +
Sbjct: 139 QLMWSLGVPEDVAEFHDVYSLDADALEMVPQPVLAVVFCFPDPTQLSTIMGFSLYLIYTL 198
Query: 370 SDAYENHKKTEENEILSKGQEVSGNIFYMKQ--NISNACGTIALVHSVANNTDIIEL 534
S +L G++ + +F++KQ ++ NACGTIAL+H+V N I L
Sbjct: 199 SPTSVQDASNPSQHLLITGEKET--LFFIKQIESLGNACGTIALLHAVGNAYSEISL 253
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 430 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATAR 594
++S +++ KQ + NACGT+ ++H++ N ++L +G + +F + +D R
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQR 247
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +1
Query: 247 KFLQKLGVPN-KWNIVDVMGLDPETLSWVPRPVLSVMLLFPIS 372
+F+ LGV + DV GLD E L+ VP+PVL+V+ L+P++
Sbjct: 65 QFMWGLGVAEGEAQFCDVYGLDDELLAMVPQPVLAVLFLYPLT 107
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 37.1 bits (82), Expect = 0.011
Identities = 27/102 (26%), Positives = 54/102 (52%)
Frame = +1
Query: 220 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 399
+ES+P V + +Q++ V + ++ LD +++S + RPV ++ LF + +K
Sbjct: 6 IESDPGVFTELIQEMQVKGV-QVEELYSLDVDSISEL-RPVYGLIFLFK----WMAGEKD 59
Query: 400 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDI 525
E + ++ + N+F+ Q I NAC T A++ + N +I
Sbjct: 60 ERPVV----KDPNPNLFFASQVIPNACATQAILSILMNRPEI 97
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 35.1 bits (77), Expect = 0.043
Identities = 34/120 (28%), Positives = 67/120 (55%)
Frame = +1
Query: 220 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 399
+E++P + + LQ++ + + ++ LD + L+ + +PV +++L+ ++ +K
Sbjct: 60 IENDPGIFTELLQQMQLKGL-QVDELYSLDLDALNDL-QPVYGLIVLYK----WQPPEK- 112
Query: 400 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 579
+E I ++ N+F+ KQ I+NAC T A+V SV N+ I LS+ ++K AK L
Sbjct: 113 DERPI----KDPIPNLFFAKQIINNACATQAIV-SVLLNSPGITLSE-ELKKLKEFAKDL 166
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 320 SVSGSSPMTSTIFHLFGTPSFCKNLFRTSGLDSRGTKVSVAISVTL 183
S S+P +S++F TP+ NLF TSG T + TL
Sbjct: 230 STPASAPSSSSLFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTPTL 275
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 361 FPISDAYENHKKTEENEIL-SKGQEVSGNIFYMKQNISNACGTIALVHSVANN 516
+ +SD + +++ EE E+L ++ +E + + +N+S+ C T+ + V N+
Sbjct: 2692 YRVSDGKDPYEQMEEEELLRNRLEESEQDRSKLAENLSSLCATVLKIAGVRNH 2744
>05_01_0546 -
4769565-4769612,4769873-4770037,4770192-4770200,
4770412-4770680,4772931-4772994
Length = 184
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 181 YRVTEMATETLVPLESNPDVLNKFLQKLGVPNKW 282
+R T M L+PL + P +NKF Q L +W
Sbjct: 50 WRRTRMQPMLLLPLRARPRSINKFKQVLPQRQEW 83
>02_03_0356 + 18073794-18074052,18074054-18074163
Length = 122
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +3
Query: 150 AGAPVTYSVILQSD*NGDRNFSPS*IQSRCPEQVFAKARRTKQMEYCRCHGT*-S*NAFV 326
AGA + S + + D +++ S CP+ R+ + T S +A V
Sbjct: 10 AGATTSCSASKKPRASTDASYAESLRSKLCPDASILATLRSLASACSKSKLTGLSPSAGV 69
Query: 327 GTSPCAFCNATFPNF*CLRKSQK 395
S C +TFPN C+R S++
Sbjct: 70 SPSRCPPTRSTFPNLNCMRSSKR 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,915,067
Number of Sequences: 37544
Number of extensions: 296659
Number of successful extensions: 583
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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