Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l02f
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               31   0.70 
SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)                   30   1.6  

>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 340 VLSVMLLFPISDAYENHKKTEE-NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN 516
           V   + LF   +   + +K +  +E   + +E+  +IF+ +Q I N+C T AL+ SV  N
Sbjct: 27  VYGFIFLFKWIEERRSRRKIQHIDESFVENEEIVNDIFFAQQVIPNSCATHALL-SVLLN 85

Query: 517 TDIIELSD 540
              I+L +
Sbjct: 86  CPHIDLGE 93


>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
          Length = 720

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +1

Query: 175 LFYRVTEMATETLVPLES-NPDVLN-KFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLS 348
           L Y  TE  T  L  LE   P+  N K  +K   P    +  V+  +P +L    R   S
Sbjct: 222 LVYEYTEPQTIPLGFLEEVMPEKTNRKPPEKQPAPIHQRLTSVIRKNPLSLEHCERKPRS 281

Query: 349 VMLLFPISDAYENHKKTEENEILSKGQEVS 438
              L  IS+  E  K  +ENEILS  +E S
Sbjct: 282 STTLMAISE--ETMKNHQENEILSSVEESS 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,847,083
Number of Sequences: 59808
Number of extensions: 357361
Number of successful extensions: 747
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)