Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l02f
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin c-t...    89   3e-18
AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin c-t...    88   4e-18
AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...    86   2e-17
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    38   0.004
Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical pr...    36   0.029
Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      28   4.4  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    28   4.4  
Z81543-5|CAB04427.2|  507|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 3 protein.
          Length = 227

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
 Frame = +1

Query: 220 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 399
           LESNP+ +N FL+K+G+      VDV   D E L +VP P L+++L FP ++A E   K 
Sbjct: 12  LESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQ 70

Query: 400 EENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 573
            E E+   G++  G +F+M Q+  I NACGT AL HS+AN  + + L  G   K+  +AK
Sbjct: 71  YE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAK 128


>AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 1 protein.
          Length = 216

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
 Frame = +1

Query: 217 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 396
           PLESNP V+N  ++K+GV      VDV+  D E++    +P  +V+L FP       +KK
Sbjct: 7   PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKK 56

Query: 397 TEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 570
            +E    I  + +    ++F+MKQ ISNACGT AL HS+AN  D I L DG   K+L EA
Sbjct: 57  VDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEA 116

Query: 571 K 573
           K
Sbjct: 117 K 117


>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
 Frame = +1

Query: 220 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 399
           LESNP+ +N FL K+GV      VDV   D E L ++P P L+++L FP S   E   K 
Sbjct: 11  LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQ 69

Query: 400 EENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 573
            E E+   G++  G IF+M  K+ I +ACGT +L HS+AN  + + L +G   K+  +AK
Sbjct: 70  YE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAK 127


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +2

Query: 2   RSLSFYYFENIIRF-VKLLPFY*LITFINSTIWYVFNSIVN 121
           R LS  +   ++RF V+ LPF+ L+  +N+++W++ NS+VN
Sbjct: 116 RYLSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVN 156


>Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical
           protein C08B11.7 protein.
          Length = 321

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 31/118 (26%), Positives = 56/118 (47%)
 Frame = +1

Query: 220 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 399
           +ES+P V  + L+  GV     + ++  LD +    + RP   ++ LF         ++ 
Sbjct: 10  IESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQG 59

Query: 400 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 573
           +E   +   ++   NIF+  Q I NAC T AL++ + N    +E +D  +   LN+ K
Sbjct: 60  DETTGIPSDKQ---NIFFAHQTIQNACATQALINLLMN----VEDTDVKLGNILNQYK 110


>Z50071-3|CAA90407.1|  613|Caenorhabditis elegans Hypothetical
           protein T07D4.4c protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +1

Query: 181 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 318
           Y+ T+ ATE     VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 155 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 203


>Z50071-2|CAA90406.1|  638|Caenorhabditis elegans Hypothetical
           protein T07D4.4b protein.
          Length = 638

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +1

Query: 181 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 318
           Y+ T+ ATE     VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 180 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 228


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +1

Query: 181 YRVTEMATETL---VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 318
           Y+ T+ ATE     VP+ ++  +LNKF+QK     K  +VDV   DP++
Sbjct: 564 YKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 612


>Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical
           protein F12F6.8 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 174 LSRLPVHRQ*QMKKYLRRFTIELKTYQIVELMK 76
           L R+P H   Q+++YL  +++  K  +IV L K
Sbjct: 572 LERVPTHLTDQIREYLANYSLRTKFRKIVSLSK 604


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 295 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 471
           +M +   T +W+    L   ++  +  A  +H   T +N +++ G   S  +   +    
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320

Query: 472 NACGTIALVHSVANNTDIIELSDGH 546
               T+    +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 295 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 471
           +M +   T +W+    L   ++  +  A  +H   T +N +++ G   S  +   +    
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320

Query: 472 NACGTIALVHSVANNTDIIELSDGH 546
               T+    +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 295 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 471
           +M +   T +W+    L   ++  +  A  +H   T +N +++ G   S  +   +    
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307

Query: 472 NACGTIALVHSVANNTDIIELSDGH 546
               T+    +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332


>Z81543-5|CAB04427.2|  507|Caenorhabditis elegans Hypothetical
           protein F49B2.5 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 436 SGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKG 576
           SGN     QNIS +   +AL    A   D +      + + LN+ +G
Sbjct: 46  SGNTIDKNQNISQSANFVALFQYDARTDDDLSFKKDDILEILNDTQG 92


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +1

Query: 373 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 540
           DA++   K    E+L  G  + G++   K+  S    T  +V  + N     TD   L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373

Query: 541 --GHMQKFLNEA-KGLDATAR 594
             GHM+  L +  K LD  +R
Sbjct: 374 EMGHMESTLADIYKNLDGASR 394


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +1

Query: 373 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 540
           DA++   K    E+L  G  + G++   K+  S    T  +V  + N     TD   L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359

Query: 541 --GHMQKFLNEA-KGLDATAR 594
             GHM+  L +  K LD  +R
Sbjct: 360 EMGHMESTLADIYKNLDGASR 380


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +1

Query: 373 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 540
           DA++   K    E+L  G  + G++   K+  S    T  +V  + N     TD   L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362

Query: 541 --GHMQKFLNEA-KGLDATAR 594
             GHM+  L +  K LD  +R
Sbjct: 363 EMGHMESTLADIYKNLDGASR 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,632
Number of Sequences: 27780
Number of extensions: 285468
Number of successful extensions: 774
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)