Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l01f
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 29 0.14
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 4.1
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 4.1
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 24 5.4
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 24 7.1
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 24 7.1
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 23 9.4
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 9.4
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 23 9.4
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 23 9.4
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 29.5 bits (63), Expect = 0.14
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 198 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 67
HNP L L +SRE SL D + R TL +S+LVS +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 77 SLTRLDTMLRVNLFLRSPPPRAKLLNS 157
SL+ L LR + +R PP +K++NS
Sbjct: 685 SLSPLSYRLRKSKHIRESPPSSKVINS 711
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 44 TLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 160
TLTA+L+ T L+T L+ + PP L++S+
Sbjct: 139 TLTASLERATQPPTNLETALQFRVIRTIPPNSLDLMHSV 177
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 281 VKKNVQKNMAVSIKLITSNKRMWWMLRHTILY 186
+KKN +++S+ T N + ++RH +LY
Sbjct: 155 LKKNRVDGLSLSMHFSTGNYSLPVLIRHVLLY 186
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 120 SGRLRHELNF*IPWIDLSNEALIQDCVAKHPPHS 221
+ R +LNF + +D S E + +HPP+S
Sbjct: 801 NSRTVEDLNFAMQQLDASIETFTKLVSVEHPPYS 834
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 222 ENVVDASPHNPVLRLHYLNLSREFRSLARGGGDLRNRF 109
+N+ + + H R+ YL++S + +S+ G GD RF
Sbjct: 370 KNIANLTAHTN--RVLYLSMSPDGQSIVTGAGDETLRF 405
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 222 ENVVDASPHNPVLRLHYLN-LSREFRSLA 139
E ++D S NPV +LN LS F +LA
Sbjct: 510 EGILDLSDLNPVFLKKFLNILSGSFATLA 538
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 266 VRFFLLFGCXFQY 304
+ FFLL GC F Y
Sbjct: 95 ISFFLLIGCLFAY 107
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +1
Query: 43 NTDGKPETITYFADETGYHAQGESIPQVASATS*TSKFP 159
N D +P +F + HA+ S+P + + T P
Sbjct: 248 NVDSRPRRERHFHGRSFAHAEHHSVPNMRNDTPGNEALP 286
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 272 NVQKNMAVSIKLITSNKRMWWMLRHTIL 189
++ +N + S++ SN+ +W MLR L
Sbjct: 534 DIIQNSSTSMESCESNEELWEMLRKVFL 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,483
Number of Sequences: 5004
Number of extensions: 21751
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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