Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l01f
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105...    29   1.2  
09_03_0032 + 11742279-11742398,11743318-11743359,11743394-117435...    27   5.0  
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046...    26   6.6  
06_01_0022 - 218860-219053,219707-220010                               26   8.7  
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023...    26   8.7  

>02_05_0061 +
           25506648-25509399,25509564-25509901,25510392-25510593,
           25510779-25510854,25512036-25512294
          Length = 1208

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 4   HFIVAVRGSYSYTNTDGKPETITYFADETGYHAQGES 114
           HF+     + SY N DG+      FA+ TG   QG +
Sbjct: 614 HFLTLYDLNLSYNNFDGEVPVFGVFANATGISVQGNN 650


>09_03_0032 +
           11742279-11742398,11743318-11743359,11743394-11743555,
           11743768-11743888,11744104-11744195,11744271-11744371,
           11744592-11744949
          Length = 331

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 53  ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLN---SLDRF 169
           + L+PL   L  + T   +N    SP PR+K LN   SL RF
Sbjct: 10  SKLQPLTNHLLSVFTSANLNSSSDSPLPRSKYLNHLSSLSRF 51


>12_02_0477 +
           19503678-19503803,19504381-19504422,19504631-19504684,
           19504946-19505068,19505154-19505210,19505299-19505373,
           19505925-19506026
          Length = 192

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 201 PHNPVLRLHYLNLSRE-FRSLARGGGDLRNRFTLSMVSSLVSEVRNGFRFAVSVRVTVAS 25
           PH        +++S + F SL    G+ ++   L    +L+S++++GF     + VTV S
Sbjct: 117 PHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMS 176

Query: 24  THSNNKV 4
                ++
Sbjct: 177 AMGEEQI 183


>06_01_0022 - 218860-219053,219707-220010
          Length = 165

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 44  TLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 160
           T    L+P     T    +L   + L +PPPRA+L   L
Sbjct: 47  TTVERLRPQSHGHTLTARVLSARIILDNPPPRARLAECL 85


>02_05_1276 +
           35397948-35398298,35398937-35401738,35402085-35402306,
           35402503-35402562,35402615-35402698,35402740-35402816,
           35403147-35403363
          Length = 1270

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 183 RLHYLNLSREFRSLARGGGDLRNRFTLSMVSSLVSEVRNGFRFAVSV 43
           R+ +L+L+    +   G GDLR    +  V  ++  ++ GFRF   +
Sbjct: 89  RVVFLHLAPSPPTPLEGAGDLRELLFMFSVCHVIIFLQEGFRFDTQI 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,307,382
Number of Sequences: 37544
Number of extensions: 141403
Number of successful extensions: 361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)