Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l01f
(335 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22) 27 2.9
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13) 26 6.6
SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4) 26 6.6
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32) 26 6.6
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_31254| Best HMM Match : rve (HMM E-Value=5.2e-15) 26 8.7
SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32) 26 8.7
SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 26 8.7
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 26 8.7
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33) 26 8.7
SB_3366| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_1129| Best HMM Match : PAM2 (HMM E-Value=0.028) 26 8.7
>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
Length = 1123
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 20 CVEATVTRTLTANLKPLRTSLTRLDT 97
C T +T N KP +TSLTRL++
Sbjct: 348 CPVDTKAMNITVNYKPEKTSLTRLES 373
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 26.6 bits (56), Expect = 5.0
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = -3
Query: 198 HNPVLRLHYLNLSREFRSLARGGGDLRNR----FTLSMVSSLVSEVRNGFRFAVSVRVTV 31
H VLR L++ ++ GD+ + TLS V LVS GF A SV T+
Sbjct: 2893 HEEVLRQLRQGLTKCYQVAFETRGDVSSARITPHTLSFVKKLVSTFGIGFEPASSVSTTL 2952
Query: 30 ASTHSNNKVR 1
++ S + R
Sbjct: 2953 STAASESLAR 2962
>SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13)
Length = 278
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 20 CVEATVTRTLTANLKPLRTSLTRLDT 97
C T T ++T KP +TSLTRL++
Sbjct: 98 CPAYTRTTSITVIYKPEKTSLTRLES 123
>SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)
Length = 306
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 291 QPNSKKKRTKKYGSEHQINNE*QENVVDASPHNPVL 184
+P +KKK GS+HQI N +E + P P L
Sbjct: 112 EPVAKKKYISTVGSKHQIFNH-REGGLFVDPERPYL 146
>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
Length = 1626
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 168 NLSREFRSLARGGGDLRNRFTLSMVSSL 85
N++R R + R DL+ RFT V SL
Sbjct: 1473 NVTRRMRFIQRSKEDLKKRFTREYVQSL 1500
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 120 RNRFTLSMVSSLVSEVRNGFRFAVSVRVTVAST 22
R T S++S L ++ + +FA +VRV+V ST
Sbjct: 1865 RQTSTTSIMSDLPTDTQKFLKFAGNVRVSVHST 1897
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 168 NLSREFRSLARGGGDLRNRFTLSMVSSL 85
N++R R + R DL+ RFT V SL
Sbjct: 261 NVTRRMRFIQRSKEDLKKRFTREYVRSL 288
>SB_31254| Best HMM Match : rve (HMM E-Value=5.2e-15)
Length = 341
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 168 NLSREFRSLARGGGDLRNRFTLSMVSSL 85
N++R R + R DL+ RFT V SL
Sbjct: 236 NVTRRMRFIQRSKEDLKKRFTREYVRSL 263
>SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32)
Length = 1027
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 168 NLSREFRSLARGGGDLRNRFTLSMVSSL 85
N++R R + R DL+ RFT V SL
Sbjct: 844 NVTRRMRFIQRSKEDLKKRFTREYVRSL 871
>SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 763
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 168 NLSREFRSLARGGGDLRNRFTLSMVSSL 85
N++R R + R DL+ RFT V SL
Sbjct: 616 NVTRRMRFIQRSKEDLKKRFTREYVRSL 643
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 59 LKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 166
L L ++TRLDT+LRV L + P L++L R
Sbjct: 154 LDTLPRAVTRLDTLLRVGTRLDTLPRVVTRLDTLPR 189
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -3
Query: 306 TY*KXQPNSKKKRTKKYGSEHQINNE*QENVVDASPHNPVLRLHYLNLSREFRSLARGGG 127
T+ K SK+K KK+ +H+ +++ + +V N + + + +R R+ +G
Sbjct: 63 THVKKTSISKRKHAKKHKVKHEKSDDKKSHVNVKKGENVLNKTRDSSKNRTRRASEKGSK 122
Query: 126 DLRNR-FTLSMVSSLVSEVRNGFR 58
L++R L + + +V NG R
Sbjct: 123 KLKSRKHGLPTLHAEKDKVENGSR 146
>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1358
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 168 NLSREFRSLARGGGDLRNRFTLSMVSSL 85
N++R R + R DL+ RFT V SL
Sbjct: 1211 NVTRRMRFIQRSKEDLKKRFTREYVRSL 1238
>SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33)
Length = 1485
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 168 NLSREFRSLARGGGDLRNRFTLSMVSSL 85
N++R R + R DL+ RFT V SL
Sbjct: 1373 NVTRRMRFIQRSKEDLKKRFTREYVRSL 1400
>SB_3366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 168 NLSREFRSLARGGGDLRNRFTLSMVSSL 85
N++R R + R DL+ RFT V SL
Sbjct: 9 NVTRRMRFIQRSKEDLKKRFTREYVRSL 36
>SB_1129| Best HMM Match : PAM2 (HMM E-Value=0.028)
Length = 235
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 168 NLSREFRSLARGGGDLRNRFTLSMVSSL 85
N++R R + R DL+ RFT V SL
Sbjct: 88 NVTRRMRFIQRSKEDLKKRFTREYVRSL 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,584,814
Number of Sequences: 59808
Number of extensions: 165296
Number of successful extensions: 455
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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