Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l01f
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical pr...    29   0.63 
Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical p...    29   0.63 
Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical p...    27   2.5  
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    27   2.5  
AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical ...    27   2.5  
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    27   2.5  
Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical p...    27   4.4  

>Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 291 QPNSKKKRTKKYGSEHQINNE*QENVVDASPHNPVLRLHYLNLSREFRSLA 139
           QP       KK+ S   +N E  + +VDA+P    +R    ++S  + SL+
Sbjct: 238 QPEKLSDEIKKWASNLSLNKEENDVIVDATPSVDTVRRWTRSISHTYPSLS 288


>Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 291 QPNSKKKRTKKYGSEHQINNE*QENVVDASPHNPVLRLHYLNLSREFRSLA 139
           QP       KK+ S   +N E  + +VDA+P    +R    ++S  + SL+
Sbjct: 238 QPEKLSDEIKKWASNLSLNKEENDVIVDATPSVDTVRRWTRSISHTYPSLS 288


>Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical
           protein ZK1053.7 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 19  VRGSYSYTNTDGKPETITYF 78
           ++ +YSY N DG P + TY+
Sbjct: 112 IKDTYSYDNVDGTPISCTYY 131


>Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 53  ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 166
           A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 53  ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 166
           A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 53  ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 166
           A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 53  ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 166
           A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 611 AVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical
           protein F49E12.9a protein.
          Length = 269

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 169 KSIQGI*KFSSWRRRPEE*IHPE 101
           KSI+G   + SW  +P + IHPE
Sbjct: 242 KSIEGKRNYMSWSMKPIKQIHPE 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,027,265
Number of Sequences: 27780
Number of extensions: 122035
Number of successful extensions: 349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)