Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l01f
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    42   2e-06
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   1.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   3.0  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   4.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 41.9 bits (94), Expect = 2e-06
 Identities = 19/36 (52%), Positives = 23/36 (63%)
 Frame = +1

Query: 13  VAVRGSYSYTNTDGKPETITYFADETGYHAQGESIP 120
           V  +GS SYT  DG+  +ITY ADE G+  QG  IP
Sbjct: 69  VVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIP 104


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 53  ANLKPLRTSLTRLDTMLRVNLFLRS 127
           A ++P   + T    ++RVNLF+RS
Sbjct: 45  ARIRPSGENATDGPAIVRVNLFVRS 69


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 53  ANLKPLRTSLTRLDTMLRVNLFLRS 127
           A ++P   + T    ++RVN+F+RS
Sbjct: 45  ARIRPSGENATDGPAVVRVNIFVRS 69


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 260 NMAVSIKLITSNKRMWWMLRHT 195
           N+A+S+ L  +  ++W+  R T
Sbjct: 40  NLALSLSLTETQVKIWFQNRRT 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,777
Number of Sequences: 438
Number of extensions: 1601
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)