Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k23f
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   1.4  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   1.4  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   1.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 280 LIPLSVSYPKLNPSGFTSVSERRMTASAS 194
           L+ + ++ PK++  G+T V+   +TAS +
Sbjct: 338 LVAIQMNPPKVSLKGYTVVNRELVTASVA 366


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 280 LIPLSVSYPKLNPSGFTSVSERRMTASAS 194
           L+ + ++ PK++  G+T V+   +TAS +
Sbjct: 338 LVAIQMNPPKVSLKGYTVVNRELVTASVA 366


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 280 LIPLSVSYPKLNPSGFTSVSERRMTASAS 194
           L+ + ++ PK++  G+T V+   +TAS +
Sbjct: 338 LVAIQMNPPKVSLKGYTVVNRELVTASVA 366


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin
          deacetylase 1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 57 VLALCVCAVSAQE 95
          +LA+C C V AQ+
Sbjct: 10 ILAICACTVFAQQ 22


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 509  REKVINPEDSEHNDPRQRXVDFIS 580
            R+ ++NP   E  D R+  V+F+S
Sbjct: 1206 RDDLVNPYWIEDPDVRKGEVEFLS 1229


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 509  REKVINPEDSEHNDPRQRXVDFIS 580
            R+ ++NP   E  D R+  V+F+S
Sbjct: 1206 RDDLVNPYWIEDPDVRKGEVEFLS 1229


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 509  REKVINPEDSEHNDPRQRXVDFIS 580
            R+ ++NP   E  D R+  V+F+S
Sbjct: 1206 RDDLVNPYWIEDPDVRKGEVEFLS 1229


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 509  REKVINPEDSEHNDPRQRXVDFIS 580
            R+ ++NP   E  D R+  V+F+S
Sbjct: 1206 RDDLVNPYWIEDPDVRKGEVEFLS 1229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,353
Number of Sequences: 336
Number of extensions: 2287
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)