Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k23f
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    29   3.7  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 408 YQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKK 518
           Y+ QS  LP  PP P A+   +D++ AH P + T+++
Sbjct: 54  YRHQSSSLPTLPP-PVALIN-LDFVAAHSPHSPTIRR 88


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 189 GSEADAVILRSDTEVNPDGFSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYS 356
           G + D      D  V  +  + GYE DNG+    +G+    DN       G Y+YS
Sbjct: 22  GDDVDDAGDEDDNSVGDEDDNVGYEGDNGVGGDDNGAGGDDDN-----SVGDYDYS 72


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +3

Query: 354 SAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKKL*IQK 533
           +AP+ T      TA E    P++ L P A   PEA   A   ++   P+T T   L    
Sbjct: 477 TAPETTTASLVTTAPETTTAPEATLAPEATTAPEA---ATASLVTTAPET-TTASLATTA 532

Query: 534 IQSTTTP 554
            ++TT P
Sbjct: 533 PETTTAP 539


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 195  EADAVILRSDTEVNPDGFSFGYETDN-GISAQSSGSLK 305
            E D +++ + T+V      + Y TD   I  QS G LK
Sbjct: 1878 EQDVIVMHAQTQVESTPIEYDYNTDEYEIKRQSVGKLK 1915


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,196,806
Number of Sequences: 59808
Number of extensions: 293705
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)