Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k21r
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.64 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   5.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   7.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 0.64
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 193 LILPKITTLMETATNLSTTVHI-TWTLP 113
           L+LPK+T  +E    L+ TV I TW  P
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWIHP 545


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 135  CILRGPSPRPTLLQA 91
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 120 PSPRPTLLQAYPFPWCSRWEVKNILE 43
           P P+P L + YP    ++ ++  IL+
Sbjct: 31  PRPKPLLKKEYPLVMDTKLKIIEILQ 56


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 296 LALLAMANAQDPVKVVENADSGNGYEPIDNRPY 198
           L L  M     P+ +V+N +S      I N P+
Sbjct: 297 LTLAKMEKTSKPLPMVDNPESTGNLVYIYNNPF 329


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 212 DNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 84
           +N  Y  N   +YN N N Y       Y ++  +  P   P P
Sbjct: 92  NNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVP 134


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 101 KVGLGEGPRNMH 136
           K GLG+GPR  +
Sbjct: 562 KTGLGKGPRTTY 573


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 179 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 78
           +YN   N Y+P+     Y++         P PFP
Sbjct: 323 NYNNYNNNYKPLHYNINYIEQIP-----VPVPFP 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,322
Number of Sequences: 438
Number of extensions: 2479
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)