Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k21f
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.23 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.53 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   0.70 
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    27   0.92 
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   1.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   1.6  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   2.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   3.7  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   3.7  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   4.9  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   6.5  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   6.5  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    24   8.6  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    24   8.6  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 326 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 210
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 186 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 290
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 139 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSL 288
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 111 VVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 278
           ++EN +  +  +     P   + PK   PN N  +P  NG   + PP    Y KPT
Sbjct: 23  MLENEEEASHSQLFTPCPVPPSFPKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +3

Query: 105 VKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 281
           V+++++  S +  + +  +P   N  +  N N    +P D       PP      +PTP
Sbjct: 126 VRIIDHRQSPSADQTVQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPVYHTVLRPTP 184


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 212  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 319
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 127 TQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 285
           T ET T  +    T   + + TT+      + T +  T T P  + T+ LP++
Sbjct: 103 TVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 120  NADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 287
            N    N Y PI      VNP   Y P+G        G+  V PP+ +P  +  P P
Sbjct: 977  NMPPSNPYTPIAVASSTVNPAHTYKPHG--------GSQIVPPPK-QPANRVVPLP 1023


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 79  WLWPTLKTQLR*WKTLTQETATN 147
           W WPT  + LR    +T ET T+
Sbjct: 375 WFWPTFASFLRESDVVTTETGTS 397


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 183 KDYNPNGNGYEPIDNGAYYVDPPQGRP 263
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  FVLALLAMANAQDPVKVVENADSGNGYEP 149
           F+  +L++A  + P  V  + D+G GY P
Sbjct: 223 FLFPILSLAFDKGPAAVPVDQDAGMGYRP 251


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 424 FFXKHYNMFIYLFR*HKFI*NFEI 353
           FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 150 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 236
           +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 114 VENADSGNGYEPIDNRPYIVNPPKDYNPNGNGY 212
           + +  + NGY+P+     I   P  Y P  +G+
Sbjct: 413 IHDCSTNNGYQPLRKNQVITIEPGLYVPEEDGW 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,068
Number of Sequences: 5004
Number of extensions: 36467
Number of successful extensions: 119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)