Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11k21f
(425 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 36 0.009
Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical pr... 33 0.086
AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical ... 33 0.086
AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical ... 33 0.086
AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical ... 30 0.80
Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 29 1.8
Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z82262-1|CAB05151.2| 361|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 3.2
U40029-3|AAA81124.1| 269|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical pr... 27 4.3
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 27 4.3
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF002198-10|AAF99937.1| 471|Caenorhabditis elegans Hypothetical... 27 7.4
U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm recept... 26 9.8
AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical... 26 9.8
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 36.3 bits (80), Expect = 0.009
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +1
Query: 73 LCWLWPTLKTQLR*WKTLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHI---TW 243
LC+LW L T T T T T+ + T T++++ TT +TTV + T
Sbjct: 179 LCYLWVPLTTTTT--TTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLNGTTT 236
Query: 244 TLPKADLTSSLPLS 285
T+P + T++ PL+
Sbjct: 237 TVPTNETTTTSPLN 250
>Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 33.1 bits (72), Expect = 0.086
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 111 VVENADSGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 251
+VE+ D GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 40 LVESVDDGNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 33.1 bits (72), Expect = 0.086
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 111 VVENADSGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 251
+VE+ D GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 40 LVESVDDGNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical
protein Y81G3A.1 protein.
Length = 243
Score = 33.1 bits (72), Expect = 0.086
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 111 VVENADSGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 251
+VE+ D GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 40 LVESVDDGNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical
protein R52.6 protein.
Length = 151
Score = 29.9 bits (64), Expect = 0.80
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 121 TLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 249
TL E T ++TT TS + K+ M AT + WTL
Sbjct: 47 TLPYEETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTL 89
>Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical
protein F31B9.4 protein.
Length = 181
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 88 PTLKTQLR*WKTLTQET--ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP 252
P + T +R T T T A N+ TT T+ I P T T +TTV T T P
Sbjct: 17 PVITTTIRPNSTTTTTTSPAPNITTTTTTTTIAPPTNTTTTILTT-TTTVTTTTTSP 72
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +3
Query: 126 DSGNGYEPIDNRPYIVNPPKDYNPNGNGY--EPIDNGAYY---VDPPQ 254
D+ N Y+P++ +VNP K + NG+ + + + A Y VDPP+
Sbjct: 824 DNANAYKPMNPIEMVVNPTKYAKKSSNGFMEKVVKDIAEYPKPVDPPK 871
>Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical
protein T27E7.1 protein.
Length = 226
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +3
Query: 117 ENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PF 284
+N G + P N + N P + GY P PP+G Y++P P+
Sbjct: 34 QNPQPGASFPP--NMNPVTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPY 91
Query: 285 PGARGGK 305
+GGK
Sbjct: 92 KPGKGGK 98
>Z82262-1|CAB05151.2| 361|Caenorhabditis elegans Hypothetical
protein C43F9.4 protein.
Length = 361
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 51 FFMIFVLALLAMANAQD---PVKVVENADSGNGYEPIDNRPYI 170
F++IF++ ++ M + D P+ +N D N +EP RP+I
Sbjct: 29 FWVIFIVIIVVMTHFNDYSEPIVPWDNCDMNNTWEP-TTRPFI 70
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 115 WKTLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWT 246
WK T TT + + PK TTL +T T +T+ T T
Sbjct: 134 WKKFTTTEEPLETTTTKRIITTPKRTTLRKTTTTTTTSTTSTST 177
>U40029-3|AAA81124.1| 269|Caenorhabditis elegans Hypothetical
protein F10G7.6 protein.
Length = 269
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 144 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 230
EP D P + V PP + PN NG P NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268
>Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical
protein K02B12.2 protein.
Length = 196
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 172 LILPKITTLMETATNLSTTVHITWTLPKAD 261
+I+ TT +++ T+LS + TW LPK D
Sbjct: 18 VIVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.5 bits (58), Expect = 4.3
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 121 TLTQETATNLLTT----ARTSLILPKITTLMETATNLSTTVHITWTLP-KADLTSSLP 279
T T +T+T + TT T+ PK TT ETAT S+T +T P T++LP
Sbjct: 497 TTTVQTSTTVPTTPSKTTATTTTTPKPTT-TETATTSSSTTTVTTQKPTTVTSTTTLP 553
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 27.5 bits (58), Expect = 4.3
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 121 TLTQETATNLLTT----ARTSLILPKITTLMETATNLSTTVHITWTLP-KADLTSSLP 279
T T +T+T + TT T+ PK TT ETAT S+T +T P T++LP
Sbjct: 338 TTTVQTSTTVPTTPSKTTATTTTTPKPTT-TETATTSSSTTTVTTQKPTTVTSTTTLP 394
>Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical
protein F13H10.6 protein.
Length = 88
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3
Query: 141 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 281
Y+P + P P P GY P G YY QG PY+ P
Sbjct: 3 YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 27.5 bits (58), Expect = 4.3
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 121 TLTQETATNLLTT----ARTSLILPKITTLMETATNLSTTVHITWTLP-KADLTSSLP 279
T T +T+T + TT T+ PK TT ETAT S+T +T P T++LP
Sbjct: 378 TTTVQTSTTVPTTPSKTTATTTTTPKPTT-TETATTSSSTTTVTTQKPTTVTSTTTLP 434
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
C27B7.4 protein.
Length = 1274
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 204 NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 293
NGY +NG +P Q P P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 TLTQETATNLLTTARTS-LILPKITTLMETATNLSTTVHITWTLP 252
T T T T TT T +I P + T STT + +TLP
Sbjct: 420 TTTTTTTTEAPTTTTTEPIIYPPANFKKASKTTTSTTTEMIYTLP 464
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 TLTQETATNLLTTARTS-LILPKITTLMETATNLSTTVHITWTLP 252
T T T T TT T +I P + T STT + +TLP
Sbjct: 420 TTTTTTTTEAPTTTTTEPIIYPPANFKKASKTTTSTTTEMIYTLP 464
>AF002198-10|AAF99937.1| 471|Caenorhabditis elegans Hypothetical
protein F35F10.12 protein.
Length = 471
Score = 26.6 bits (56), Expect = 7.4
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +3
Query: 132 GNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 299
G G P P V PP Y P +G DNGA P G PY P P G
Sbjct: 357 GGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYPSDVPAPYPSG 411
>U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm receptor
protein 94 protein.
Length = 284
Score = 26.2 bits (55), Expect = 9.8
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -1
Query: 395 LFIPLT*IHMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDR 216
L + L IH + I +IH I + +Y ++ +++ +S L +V C +
Sbjct: 100 LTLVLLAIHFVYRYIAMIHPNEIRWFKYPRALIVGSQGEIQIQWKSCLAMTNVYCIAITT 159
Query: 215 FVAV-SIRVVIFGRINDVRAVVNRFVAVS*VSVFHYL 108
V + S+ I+ ++ V +V +FH L
Sbjct: 160 LVTIMSLGYSIYIKMQSVNDMVAEKTRALQRQLFHAL 196
>AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical
protein F41E6.12 protein.
Length = 304
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 172 LILPKITTLMETATNLSTTVHITWTLPKADLTSSL 276
LILP +TTL +T STT T T P T S+
Sbjct: 60 LILPPMTTL-PPSTTTSTTAEPTTTTPLKSSTDSV 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,525
Number of Sequences: 27780
Number of extensions: 213869
Number of successful extensions: 619
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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