Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k20f
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    31   0.69 
Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 365 YNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNL 508
           YNF+Y + NC   + ++L  N+FL   R Y  I C   F +++ KL L
Sbjct: 52  YNFLYFSPNCVETIFVSLGRNLFLCLQRRY--IHC---FFHFLLKLTL 94


>Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical
           protein T09E11.8 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +2

Query: 263 ANGAS-FFFYLHLFTYRTRNLL 325
           A GA+ F+FYLH +T++T+ +L
Sbjct: 166 AQGATKFYFYLHSYTWQTKKVL 187


>U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical
           protein F18F11.4 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +2

Query: 263 ANGAS-FFFYLHLFTYRTRNLL 325
           A GA+ F+FYLH +T++T+ +L
Sbjct: 216 AQGATKFYFYLHSYTWQTKKVL 237


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 264 LMELHFFFICIYLHIGRGIY 323
           L++ HF+  CIYL +G G++
Sbjct: 59  LIQSHFYVKCIYLAVGCGVF 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,289,411
Number of Sequences: 27780
Number of extensions: 205278
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)