Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k18r
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...   223   2e-59
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    33   0.043
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    29   0.70 
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   3.7  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   3.7  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   4.9  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   6.5  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   6.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   8.6  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   8.6  

>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score =  223 bits (546), Expect = 2e-59
 Identities = 106/194 (54%), Positives = 132/194 (68%)
 Frame = -1

Query: 727 IPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVA 548
           +  ++ V AQN +    GA+TGE S   + D G+ + + GHSERRTIF E DE VA+K  
Sbjct: 55  VKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTK 114

Query: 547 HALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTG 368
            ALE GL V+ACIGETL ERE+ +T  VV RQL A+   +   W  IV+AYEPVWAIGTG
Sbjct: 115 FALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAIGTG 173

Query: 367 KTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGG 188
           KTATP+QAQ+VH  +R W +  +  SV++ +R+ YGGSV   N KE     DIDGFLVGG
Sbjct: 174 KTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGG 233

Query: 187 ASLKPEFVEIVNAN 146
           ASLKPEF  IVN +
Sbjct: 234 ASLKPEFHNIVNVH 247


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +2

Query: 578 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLH 739
           F  + ++   TK N + SN+F+H+  + T +SS     T L     IIRNDS H
Sbjct: 26  FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCL----KIIRNDSFH 75


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 397 YEPVWAIGTGKT--ATPQQAQDVHHALRNWLSANVSGSVSDAVRI 269
           Y  +W++G       TP+  + VH  LR WL   V G   DA+ +
Sbjct: 172 YLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINM 216


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 254 RATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNS 382
           +AT    + + Y P  +G     K   + LSL  + ++ C NS
Sbjct: 165 KATKFPHFGILYHPESVGSSKSLKIFKNFLSLADTPNIQCVNS 207


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 286 SDAVRIQYGGSVTAANAKELASCKDIDGFLVG 191
           SD  R Q+G S+  +NAKEL     I G+  G
Sbjct: 259 SDLSRGQHGKSIILSNAKELYKSVGIRGYYRG 290


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 322 EEHGGHLEPVGE*QSCLYQ*PIQVHRQAQYFP 417
           + +GG+L P  E  S  ++ PI++ R A Y+P
Sbjct: 69  KSYGGNLAPFDEEFSFHFRGPIELKRFAVYYP 100


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 351 WGVAVLPVPIAHTGS*ASTIFSHLSPMADTKAFNCLKTTSSVLPDSLSSRVSPIQAMTF 527
           + + +LP  I    S A  +F   +P   ++ F CL   + +L   L+S V  +Q  ++
Sbjct: 226 YSLFLLPRLIRKQLSDAPIVFFLHAPFCTSEVFRCLSKRAEILKGVLASNVIAMQTDSY 284


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 423 SPMADTKAFN-CLKTTSSVLPDSLSSRVSP 509
           SP+  TK+FN  L ++SS+L   + S  SP
Sbjct: 220 SPLTKTKSFNDALTSSSSILKPCMPSIASP 249


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 721 DNVEVAAQNCWKSPKGAFTGEISPA 647
           D  E A+     SP G+FT +ISPA
Sbjct: 752 DGHEQASPLVSSSPSGSFTSQISPA 776


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 352 QQAQDVHHALRNWLSA 305
           +Q Q+ H  +RNWLS+
Sbjct: 186 KQTQETHERIRNWLSS 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,245
Number of Sequences: 5004
Number of extensions: 65981
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)