Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11k18r
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 267 7e-72
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 256 2e-68
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 250 1e-66
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 44 2e-04
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 0.97
01_06_0627 - 30705604-30706977 29 2.9
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413... 28 6.8
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 6.8
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 9.0
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 9.0
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 9.0
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 267 bits (654), Expect = 7e-72
Identities = 123/197 (62%), Positives = 154/197 (78%)
Frame = -1
Query: 739 VKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVA 560
VK+ + ++VAAQNCW GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V
Sbjct: 44 VKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVG 103
Query: 559 EKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWA 380
+KVA+AL GLKVIAC+GETLE+RESG T +VV Q KA+ I D W N+V+AYEPVWA
Sbjct: 104 DKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWA 162
Query: 379 IGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGF 200
IGTGK ATP QAQ+VH LR WL+ANVS V+++ RI YGGSVT AN KELA+ D+DGF
Sbjct: 163 IGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGF 222
Query: 199 LVGGASLKPEFVEIVNA 149
LVGGASLKPEF++I+N+
Sbjct: 223 LVGGASLKPEFIDIINS 239
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 256 bits (626), Expect = 2e-68
Identities = 122/197 (61%), Positives = 148/197 (75%)
Frame = -1
Query: 739 VKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVA 560
VK ++ + VAAQNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA
Sbjct: 53 VKGLLRPDFSVAAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVA 112
Query: 559 EKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWA 380
+K+A+AL G+KVIACIGETLE+RE+G T EVV Q KA+ I D W N+VLAYEPVWA
Sbjct: 113 DKIAYALSQGIKVIACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWA 171
Query: 379 IGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGF 200
IGTGK ATP QAQ+VH LR WL NVS +V+++ RI Y GSV AN KELA+ D+DGF
Sbjct: 172 IGTGKVATPAQAQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGF 231
Query: 199 LVGGASLKPEFVEIVNA 149
LVGGASLKPEFV+I+ +
Sbjct: 232 LVGGASLKPEFVDIIKS 248
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 250 bits (611), Expect = 1e-66
Identities = 117/198 (59%), Positives = 147/198 (74%), Gaps = 1/198 (0%)
Frame = -1
Query: 739 VKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVA 560
VK + D +EV+AQN W GA+TGEIS + D+G WVILGHSERR + GE D+ +
Sbjct: 100 VKNSLTDRIEVSAQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIG 159
Query: 559 EKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWA 380
+K A+AL +KVIACIGE LEERE+GKT +V F+Q+KA +I W ++V+AYEPVWA
Sbjct: 160 KKAAYALSQNVKVIACIGELLEEREAGKTFDVCFKQMKAFADSI-TNWADVVIAYEPVWA 218
Query: 379 IGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGF 200
IGTGK ATP+QAQ+VH A+R+WL NVS V+ +RI YGGSV AAN ELA +DIDGF
Sbjct: 219 IGTGKVATPEQAQEVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGF 278
Query: 199 LVGGASLK-PEFVEIVNA 149
LVGGASLK P+F I+N+
Sbjct: 279 LVGGASLKGPDFATIINS 296
>03_05_1169 +
30892888-30892916,30894786-30894822,30895091-30895146,
30895192-30895306,30896063-30896127,30896218-30896299,
30896420-30896479
Length = 147
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/56 (48%), Positives = 33/56 (58%)
Frame = -1
Query: 343 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK 176
Q VH LR L+ NV ++ R S TA+N KELA D++GFLV GASLK
Sbjct: 78 QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFLVSGASLK 128
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -1
Query: 586 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 407
F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198
Query: 406 VLAY 395
LAY
Sbjct: 199 TLAY 202
>01_06_0627 - 30705604-30706977
Length = 457
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 391 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 224
PV+ +G + ++ V HA WL A + SV V + +G GS +AA KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277
>09_02_0088 +
4136698-4136857,4137530-4137558,4137992-4138954,
4138973-4139301,4139398-4139485,4139766-4139864,
4139935-4140245,4140532-4140685
Length = 710
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = -1
Query: 322 RNWLSANV----SGSVSDAVRIQYGGSVT-AANAKELASCKDIDGFLVGGASLKPEFVEI 158
+NW + + SG + VR+ YGGSV +N+ + + GG KP F E+
Sbjct: 49 KNWQNGEIVGGHSGKMDRLVRLHYGGSVVEQSNSGSNFEGMSVKQLIFGG---KPSFEEL 105
Query: 157 V 155
V
Sbjct: 106 V 106
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 206 INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 355
+ FA K + SS ++ V +T+ Y P+ I ++ + K + ILS G
Sbjct: 963 LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -1
Query: 613 LGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVS 434
+ H R E D +V K+ + S L+ + +EE +S ++ L L
Sbjct: 425 ISHEYHRKRKQETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKRSSRHPVPVLSILAK 482
Query: 433 AIGDKWENIVLAYEPV 386
AIGD Y PV
Sbjct: 483 AIGDLATKEKTVYSPV 498
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 460 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 612
++LPQ + ++ Q +Q L Q Q +Q QQQ QKL Q Q
Sbjct: 44 QKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQ 94
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 615 ITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT 740
+T +SL +AG ISPV Q +TLSG + FT
Sbjct: 80 VTSLNLSSLGLAGSISPVIGNLTFLQSLDLFNNTLSGDVYFT 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,260,057
Number of Sequences: 37544
Number of extensions: 410175
Number of successful extensions: 965
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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