Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k18r
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   314   6e-88
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   3.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   3.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   3.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.0  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  314 bits (771), Expect = 6e-88
 Identities = 147/201 (73%), Positives = 172/201 (85%)
 Frame = -1

Query: 745 SYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDEL 566
           +Y K I+P+N+ +A QN +K  KGAFTGEISPAM+ D G+ WVILGHSERR IFGE DEL
Sbjct: 48  TYAKNILPNNISIAGQNTYKVAKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDEL 107

Query: 565 VAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPV 386
           +AEKVAHALESGLKVIACIGE LEERE+GKT+EVVFRQ KA+ + I + W+N+V+AYEPV
Sbjct: 108 IAEKVAHALESGLKVIACIGEKLEEREAGKTDEVVFRQTKAIANKI-NSWDNVVVAYEPV 166

Query: 385 WAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDID 206
           WAIGTGKTATPQQAQ+VH  LRNW S NV+ +V++ VRI YGGSVTA NAK+LA  KDID
Sbjct: 167 WAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETVRIIYGGSVTAGNAKDLAKEKDID 226

Query: 205 GFLVGGASLKPEFVEIVNANQ 143
           GFLVGGASLKP+FV+IVNA Q
Sbjct: 227 GFLVGGASLKPDFVQIVNAKQ 247


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 493 LRESHQYRQ*LSSQIQGHEQPFQQQ 567
           L+  H + Q  S+ +Q H +P+QQQ
Sbjct: 144 LQNHHHHLQ--STAVQDHHRPYQQQ 166


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 478 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 389
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 478 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 389
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 478 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 389
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 463 QLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQ 567
           ++ +  Q +  ++ HQ +Q  +  +   +QP QQQ
Sbjct: 410 KMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQ 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,809
Number of Sequences: 438
Number of extensions: 4236
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)