Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k18f
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...   158   5e-40
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    33   0.033
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   5.0  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   6.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   6.5  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   6.5  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    25   8.7  

>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score =  158 bits (384), Expect = 5e-40
 Identities = 80/171 (46%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
 Frame = +2

Query: 98  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDP-NVEVIVGVPAIYLSYVKTIIPDNVE 274
           M RKF VGGN+KMNG    +  I+  L    L+  +VE ++    +YL   +  +  ++ 
Sbjct: 1   MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIG 60

Query: 275 VAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESG 454
           V AQN +    GA+TGE S   + D G+ + + GHSERRTIF E DE VA+K   ALE G
Sbjct: 61  VGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQG 120

Query: 455 LKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 607
           L V+ACIGETL ERE+ +T  VV RQL A+   +   W  IV+AYEPVWAI
Sbjct: 121 LTVVACIGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAI 170


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = -3

Query: 406 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLH 245
           F  + ++   TK N + SN+F+H+  + T +SS     T L     IIRNDS H
Sbjct: 26  FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCL----KIIRNDSFH 75


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 561 SPMADTKAFN-CLKTTSSVLPDSLSSRVSP 475
           SP+  TK+FN  L ++SS+L   + S  SP
Sbjct: 220 SPLTKTKSFNDALTSSSSILKPCMPSIASP 249


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 263 DNVEVAAQNCWKSPKGAFTGEISPA 337
           D  E A+     SP G+FT +ISPA
Sbjct: 752 DGHEQASPLVSSSPSGSFTSQISPA 776


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -3

Query: 352 NVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLHIRQVNSRNTNNYLNIRI*RSLF*I 173
           N+FD     +  KS F     +   N  +I  DS  ++     NT    N     SLF  
Sbjct: 193 NIFDLDSGKWVFKSLFNHHCGIYRSNCVVINKDSEFLQMCRPINTTQDSNEHSIGSLFFY 252

Query: 172 INY-FVDLIFVTIHL 131
           +NY FV++    I+L
Sbjct: 253 LNYNFVNVKRQVIYL 267


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 23/83 (27%), Positives = 33/83 (39%)
 Frame = +2

Query: 83  NKITEMGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIP 262
           + I E+ R+ +    WK+   K  + E+    K+G L   +EV     A  +S VK I  
Sbjct: 279 DSILEICRERLAPKGWKITEGKYSMKEVAQASKEGRL---LEVFGAGTAALVSPVKAINY 335

Query: 263 DNVEVAAQNCWKSPKGAFTGEIS 331
              E           G  T EIS
Sbjct: 336 KGTEYEIPMPEGQEAGPITSEIS 358


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 248 KTIIPDNVEVAAQNCWKSPKGAFTG 322
           + +I D+V +  Q+CWK  + A  G
Sbjct: 231 RIVIRDSVTLEPQHCWKHHRDAVMG 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,756
Number of Sequences: 5004
Number of extensions: 52457
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)