Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11k18f
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23081-1|AAA79846.1| 247|Caenorhabditis elegans triosephosphate... 227 4e-60
AL023828-10|CAA19447.1| 247|Caenorhabditis elegans Hypothetical... 227 4e-60
U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related... 32 0.37
U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related... 32 0.37
AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-relat... 32 0.37
U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math ... 29 2.6
U97011-5|AAO12451.1| 168|Caenorhabditis elegans Hypothetical pr... 29 3.4
U97011-4|AAQ65202.1| 273|Caenorhabditis elegans Hypothetical pr... 29 3.4
U97011-3|AAQ65201.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical ... 28 6.0
Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical pr... 27 7.9
>U23081-1|AAA79846.1| 247|Caenorhabditis elegans triosephosphate
isomerase protein.
Length = 247
Score = 227 bits (556), Expect = 4e-60
Identities = 108/170 (63%), Positives = 131/170 (77%)
Frame = +2
Query: 98 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 277
M RKF VGGNWKMNGD ++ IV L + +V+V+V PA YL+Y K+ + V V
Sbjct: 1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 60
Query: 278 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 457
AAQNC+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK HALE+G+
Sbjct: 61 AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 120
Query: 458 KVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 607
KV+ CIGE LEERE+G T++V FRQL+A+V G WENIV+AYEPVWAI
Sbjct: 121 KVVFCIGEKLEEREAGHTKDVNFRQLQAIVDK-GVSWENIVIAYEPVWAI 169
>AL023828-10|CAA19447.1| 247|Caenorhabditis elegans Hypothetical
protein Y17G7B.7 protein.
Length = 247
Score = 227 bits (556), Expect = 4e-60
Identities = 108/170 (63%), Positives = 131/170 (77%)
Frame = +2
Query: 98 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 277
M RKF VGGNWKMNGD ++ IV L + +V+V+V PA YL+Y K+ + V V
Sbjct: 1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 60
Query: 278 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 457
AAQNC+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK HALE+G+
Sbjct: 61 AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 120
Query: 458 KVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 607
KV+ CIGE LEERE+G T++V FRQL+A+V G WENIV+AYEPVWAI
Sbjct: 121 KVVFCIGEKLEEREAGHTKDVNFRQLQAIVDK-GVSWENIVIAYEPVWAI 169
>U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related
protein protein1, isoform a protein.
Length = 705
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 149 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 274
++INE+V+ + K L P E++ + AI L+Y+ T P+ E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505
>U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related
protein protein1, isoform b protein.
Length = 712
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 149 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 274
++INE+V+ + K L P E++ + AI L+Y+ T P+ E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505
>AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-related
protein protein.
Length = 705
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 149 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 274
++INE+V+ + K L P E++ + AI L+Y+ T P+ E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505
>U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical
protein C27A2.4 protein.
Length = 678
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 373 KYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGC 278
K N ++S + +H+G + +FWR+P L C
Sbjct: 171 KVNSLFSKLSEHTG-EVINADNFWRIPDTLRC 201
>AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math
domain containingprotein 47 protein.
Length = 683
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 140 GDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIP 262
GD N I+++++ +EV+ G PAI+ + V+ I+P
Sbjct: 47 GDSNYQEHIISDVEPQDFQKFLEVVHGEPAIFEATVQKILP 87
>U97011-5|AAO12451.1| 168|Caenorhabditis elegans Hypothetical
protein F31F7.1b protein.
Length = 168
Score = 28.7 bits (61), Expect = 3.4
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 514 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 350
L+L R S + L + GN + + R +G+SN LF K NC+ F K +P+Y+
Sbjct: 73 LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132
Query: 349 VFDHSG*NFTSKSSFWRL 296
F NF + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145
>U97011-4|AAQ65202.1| 273|Caenorhabditis elegans Hypothetical
protein F31F7.1c protein.
Length = 273
Score = 28.7 bits (61), Expect = 3.4
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 514 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 350
L+L R S + L + GN + + R +G+SN LF K NC+ F K +P+Y+
Sbjct: 73 LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132
Query: 349 VFDHSG*NFTSKSSFWRL 296
F NF + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145
>U97011-3|AAQ65201.1| 316|Caenorhabditis elegans Hypothetical
protein F31F7.1a protein.
Length = 316
Score = 28.7 bits (61), Expect = 3.4
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 514 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 350
L+L R S + L + GN + + R +G+SN LF K NC+ F K +P+Y+
Sbjct: 73 LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132
Query: 349 VFDHSG*NFTSKSSFWRL 296
F NF + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145
>AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical
protein C49G7.7 protein.
Length = 893
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 128 WKMNGDKNQINEIVNNLKKGPLDPNVEVI 214
W++NGD+ ++EI N+ LD +V VI
Sbjct: 83 WEINGDRETLSEIQNHNSYRDLDMDVLVI 111
>Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical
protein K10D11.3 protein.
Length = 699
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 573 FSHLSPMADTKAFNCLKTTSSVLPDSLSSRVSPIQAMTFKPD 448
+ ++ ++ TK C TS P +L++ P+ AMT PD
Sbjct: 451 YYNVQSLSATKGVTCWSDTSC--PVTLNAAKGPVSAMTLNPD 490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,728,485
Number of Sequences: 27780
Number of extensions: 289194
Number of successful extensions: 966
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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