Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k16r
         (464 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...   146   2e-35
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...   146   2e-35
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...   146   2e-35
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...   146   4e-35
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...   140   2e-33
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...   133   3e-31
AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a ...    46   8e-05
AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.             29   6.0  

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  146 bits (355), Expect = 2e-35
 Identities = 71/143 (49%), Positives = 88/143 (61%)
 Frame = -3

Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 249 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 70
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          LPKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 69  PVIVXXXXXXXXXXXXXKDVGGA 1
           PVIV             K VGGA
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGA 143


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  146 bits (355), Expect = 2e-35
 Identities = 71/143 (49%), Positives = 88/143 (61%)
 Frame = -3

Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 249 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 70
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          LPKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 69  PVIVXXXXXXXXXXXXXKDVGGA 1
           PVIV             K VGGA
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGA 143


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score =  146 bits (355), Expect = 2e-35
 Identities = 71/143 (49%), Positives = 88/143 (61%)
 Frame = -3

Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 249 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 70
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          LPKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 69  PVIVXXXXXXXXXXXXXKDVGGA 1
           PVIV             K VGGA
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGA 143


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score =  146 bits (353), Expect = 4e-35
 Identities = 70/138 (50%), Positives = 86/138 (62%)
 Frame = -3

Query: 414 KKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 235
           +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM+++H ++
Sbjct: 5   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64

Query: 234 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQPVIVX 55
           N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          LPKQPVIV 
Sbjct: 65  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVK 124

Query: 54  XXXXXXXXXXXXKDVGGA 1
                       K VGGA
Sbjct: 125 AKFFSRRAEEKIKSVGGA 142


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  140 bits (340), Expect = 2e-33
 Identities = 69/143 (48%), Positives = 87/143 (60%)
 Frame = -3

Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 249 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 70
           ++ ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          L KQ
Sbjct: 61  YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120

Query: 69  PVIVXXXXXXXXXXXXXKDVGGA 1
           PVIV             K VGGA
Sbjct: 121 PVIVKAKLFSRRAEEKIKSVGGA 143


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score =  133 bits (321), Expect = 3e-31
 Identities = 58/106 (54%), Positives = 75/106 (70%)
 Frame = -3

Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 249 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 112
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106


>AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a
           protein.
          Length = 34

 Score = 45.6 bits (103), Expect = 8e-05
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = -3

Query: 213 LNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 112
           +NLDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 1   VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34


>AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.
          Length = 126

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 260 PSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLVF 412
           P+LPK+PG  ++ L   W S    P P G +    + PCP       PL FLV+
Sbjct: 55  PALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLVW 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,719,677
Number of Sequences: 237096
Number of extensions: 1362971
Number of successful extensions: 2845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2838
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)