Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11k15r
(739 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 91 1e-20
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 84 2e-18
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 48 1e-07
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 39 4e-05
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 3.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 3.0
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 5.2
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 22 5.2
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 22 6.9
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 6.9
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 91.1 bits (216), Expect = 1e-20
Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 1/192 (0%)
Frame = -2
Query: 738 INDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFAGDQVT 559
+ DV+K G G GR+E G+LK G V P EV+S+ ++ A GD V
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVG 309
Query: 558 LTLSGVDMQNVSVGYILSDPIEQVSV-TTRFEARIVVFNVKVPITKGFPVLVHYQSLVES 382
+ + ++ + GY+ D Q F A+++V N I+ G+ ++ + +
Sbjct: 310 FNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
Query: 381 ANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELGRVMLRVA 202
++K + TG+ ++ P+ + + A+V ++ ++P+C+E +++ LGR +R
Sbjct: 370 CKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDM 429
Query: 201 GVTIAAGLVTDI 166
T+A G++ +
Sbjct: 430 RQTVAVGVIKSV 441
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 83.8 bits (198), Expect = 2e-18
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 1/189 (0%)
Frame = -2
Query: 738 INDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFAGDQVT 559
+ DV+K G G GR+E GVLK G V P EV+S+ ++ A GD V
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVG 309
Query: 558 LTLSGVDMQNVSVGYILSDPIEQVSV-TTRFEARIVVFNVKVPITKGFPVLVHYQSLVES 382
+ V ++ + GY+ D F A+++V N I+ G+ ++ + +
Sbjct: 310 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
Query: 381 ANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELGRVMLRVA 202
+K + G+ ++ P+ + + A+V + S+P+C E +++ LGR +R
Sbjct: 370 CKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDM 429
Query: 201 GVTIAAGLV 175
T+A G++
Sbjct: 430 RQTVAVGVI 438
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 47.6 bits (108), Expect = 1e-07
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = -2
Query: 738 INDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFAGDQVT 559
+ DV+K G G GR+E GVLK G V P EV+S+ ++ A GD V
Sbjct: 193 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVG 252
Query: 558 LTLSGVDMQNVSVGYILSD 502
+ V ++ + GY+ D
Sbjct: 253 FNVKNVSVKELRRGYVAGD 271
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 39.1 bits (87), Expect = 4e-05
Identities = 20/107 (18%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = -2
Query: 582 AFAGDQVTLTLSGVDMQNVSVGYILSDPIEQ-VSVTTRFEARIVVFNVKVPITKGFPVLV 406
A GD V + + ++ + GY+ D Q F A+++V N I+ G+ ++
Sbjct: 13 ALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVL 72
Query: 405 HYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSR 265
+ + ++K + TG+ ++ P+ + + A+V ++ ++
Sbjct: 73 DCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.0 bits (47), Expect = 3.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 637 CWTNQYFIALL 669
CWTN Y+I +L
Sbjct: 109 CWTNIYYIIIL 119
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.0 bits (47), Expect = 3.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 637 CWTNQYFIALL 669
CWTN Y+I +L
Sbjct: 162 CWTNIYYIIIL 172
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.2 bits (45), Expect = 5.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 637 CWTNQYFIALL*NSVF 684
CW N Y+I +L ++F
Sbjct: 71 CWMNVYYIVILAWAIF 86
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 22.2 bits (45), Expect = 5.2
Identities = 7/21 (33%), Positives = 9/21 (42%)
Frame = -1
Query: 580 ICWRPSHIDFVWGGHAECVSW 518
ICW P + +W G W
Sbjct: 346 ICWLPFFVVNLWSGFCSQCIW 366
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.8 bits (44), Expect = 6.9
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -3
Query: 140 DYYNLNIQLKDLLLIEDVIN*KYGYVWT 57
+YY ++ + DLLL+ + + Y+W+
Sbjct: 89 NYYLFSLAVSDLLLLISGLPPEIYYIWS 116
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.8 bits (44), Expect = 6.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 444 VKVPITKGFPVLVHYQSLVESANIVKLK 361
++ P +G PVLV + V N + ++
Sbjct: 1 IRPPSKQGLPVLVDFNIFVADINSINVE 28
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,600
Number of Sequences: 438
Number of extensions: 3904
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -