Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k15f
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115...    29   2.3  
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259...    29   4.0  
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    25   7.8  
08_02_0316 + 15690452-15690555,15690871-15690965,15693707-156937...    27   9.2  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           27   9.2  

>11_06_0738 -
           26807046-26807129,26807720-26807957,26809374-26811509,
           26812145-26813253
          Length = 1188

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +1

Query: 343 QRRESTD-LCSLKLDAEGETRLMSCLDELRNIL 438
           Q RE TD +CS+ +DA+G    ++ L++L+N+L
Sbjct: 170 QFREHTDNVCSVGIDADGMEAALNDLNKLKNLL 202


>02_04_0067 -
           19425019-19425288,19425393-19425647,19425766-19425937,
           19426069-19426302,19426523-19426656,19427663-19427746,
           19428355-19428645,19428788-19429120,19429317-19429390,
           19429464-19429644,19429993-19430096,19430232-19430392,
           19430727-19431040,19431583-19431864,19432431-19432732,
           19433176-19433266,19433368-19433421,19438917-19438993,
           19439081-19439240,19439410-19439494,19439574-19440130
          Length = 1404

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +1

Query: 337 GPQRRESTDLCSLKLDAEGETRLMSCLDELRNILGDTVSENTMIQSVLKHNFDYNKALDD 516
           GP R    D  S  LD+    +++SCL ++ +I     SE+T++ S+L+   +     DD
Sbjct: 347 GPSRALFMDEISTGLDSSTTFQIVSCLQQVAHI-----SESTILVSLLQPAPETYDLFDD 401

Query: 517 IL 522
           I+
Sbjct: 402 II 403


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 24.6 bits (51), Expect(2) = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 196 PLPLNVHKNHRHHSH 152
           P P++ H +H HH H
Sbjct: 345 PAPMHHHGHHHHHHH 359



 Score = 21.4 bits (43), Expect(2) = 7.8
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -2

Query: 178 HKNHRHHSHQSN 143
           H +H HH H+ +
Sbjct: 355 HHHHHHHGHEDS 366


>08_02_0316 +
           15690452-15690555,15690871-15690965,15693707-15693783,
           15693854-15693908,15695158-15695227,15695388-15695457,
           15696047-15696340
          Length = 254

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 455 SDTVSPKIFRSSSKQDMSLVSPSASS 378
           SDT+SP IF   S   +SL SP   S
Sbjct: 208 SDTLSPSIFHQLSVSSISLHSPGGKS 233


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 166 RHHSHQSNFCSECYDVEPLFINNIKSVPMLQKPYLQ*MDVFRKNSQNK*HVS 11
           R H+H     S+ YDVE L    ++ +    + +L  MDV     + K ++S
Sbjct: 224 RFHAHAWIVVSQTYDVEELLRKVLRKIGYADQAHLDGMDVHDLKEKFKENIS 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,043
Number of Sequences: 37544
Number of extensions: 237248
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)