Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k15f
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28273| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.63)           56   3e-08
SB_21588| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               26   0.79 
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                25   1.4  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            25   3.6  
SB_11686| Best HMM Match : DUF565 (HMM E-Value=4.6)                    28   7.1  
SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_4913| Best HMM Match : CBF (HMM E-Value=2.9)                        27   9.4  
SB_36499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_32709| Best HMM Match : Spectrin (HMM E-Value=8.8)                  27   9.4  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_28273| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.63)
          Length = 435

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 27/55 (49%), Positives = 36/55 (65%)
 Frame = +1

Query: 355 STDLCSLKLDAEGETRLMSCLDELRNILGDTVSENTMIQSVLKHNFDYNKALDDI 519
           S D    +LDA  E +L SCLD+L +ILGD   E T + ++LKH+F+  KALD I
Sbjct: 22  SQDYKRPQLDALSEAKLSSCLDQLNSILGDDCHEPTAVDAILKHDFNVEKALDYI 76


>SB_21588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 175 YGHSVEE-DSCLSPSDASQWIYDRSRNQ-QVISNLL 276
           YGHSVE+ D  +SP+ A Q++Y R  N   + SN +
Sbjct: 6   YGHSVEDYDMAVSPTTAHQFMYSRGDNHPDLFSNYM 41


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 25.8 bits (54), Expect(2) = 0.79
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 178 HKNHRHHSHQSNFCSECYDVEP 113
           H  H HH H  +F    Y V P
Sbjct: 137 HHYHHHHHHHHHFVQPPYQVPP 158



 Score = 23.8 bits (49), Expect(2) = 0.79
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 205 NNYPLPLNVHKNHRHHSH 152
           N   LPL+   NHRH+ H
Sbjct: 120 NEADLPLDPTGNHRHYHH 137


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 25.4 bits (53), Expect(2) = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 229 IATHHLEINNYPLPLNVHKNHRHHSH 152
           I  HH   +++PL + +   HRHH H
Sbjct: 152 IIVHH---HHHPLSIAIIHRHRHHHH 174



 Score = 23.4 bits (48), Expect(2) = 1.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 178 HKNHRHHSHQSN 143
           H  HRHH H  N
Sbjct: 203 HHRHRHHHHHPN 214


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 25.0 bits (52), Expect(2) = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 220 HHLEINNYPLPLNVHKNHRHHSH 152
           HH + N++    N H +H HH H
Sbjct: 220 HHHQHNHHHHHHNHHHHHHHHYH 242



 Score = 22.2 bits (45), Expect(2) = 3.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 178 HKNHRHHSHQSN 143
           H +H HH H +N
Sbjct: 243 HYHHHHHHHNNN 254


>SB_11686| Best HMM Match : DUF565 (HMM E-Value=4.6)
          Length = 365

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 349 RESTDLCSLKLDAEGETRLMSCLDELRNI-LGDTVSENTMIQSVLKHNFDYNKALDD 516
           R++ +LC+   +  G   L++C D+  N  LG+ +++   I   L +N++  K  D+
Sbjct: 311 RKTCNLCNTPAEISGRNNLLTCCDDSGNFKLGNELTQ--AILGNLIYNYNREKLSDE 365


>SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -2

Query: 250 FVIGRRSIATHHLEINNYPLPLNVHKNHRHHSHQS----NFCSECYDVEPLFINNIKSVP 83
           F +G  S    H +  N P+P  V +    H HQ+       SE   V   F+NN K +P
Sbjct: 389 FPLGNASGYQQHPQAGNGPIPETVRRLPFQHFHQAAGAVQIPSEVKIVCNHFMNNCKKIP 448


>SB_4913| Best HMM Match : CBF (HMM E-Value=2.9)
          Length = 328

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 464 IVFSDTVSPKIFRSSSKQDMSLVSPSASSLRLQR 363
           ++F +    ++ RSS+KQ + L++P    LR  R
Sbjct: 76  VIFDELQRSRLKRSSAKQPLQLIAPPNDDLRCLR 109


>SB_36499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 135 PNVTMSSHCSLIISKVFLCYRNHICN 58
           PN T+ S C  ++S+    +RNH+ N
Sbjct: 12  PNSTVRSRCCYLLSRFIKSHRNHMQN 37


>SB_32709| Best HMM Match : Spectrin (HMM E-Value=8.8)
          Length = 230

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 464 IVFSDTVSPKIFRSSSKQDMSLVSPSASSLRLQR 363
           ++F +    ++ RSS+KQ + L++P    LR  R
Sbjct: 76  VIFDELQRSRLKRSSAKQPLQLIAPPNDDLRCLR 109


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 343  QRRESTDLCSLKLDAEGETRLMSCLDELRNILGDTVSENTMIQSVLKHN-FDYNKALDDI 519
            +R     L  LKL+A+   +    +DEL+ + GD  S    + S++  N  +Y K L + 
Sbjct: 1350 ERDRMAKLVQLKLEAK-RLKQEGKMDELQKLFGDAASAEANLVSLMGENRTNYEKHLQER 1408

Query: 520  L 522
            L
Sbjct: 1409 L 1409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,798
Number of Sequences: 59808
Number of extensions: 295263
Number of successful extensions: 875
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)