Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k15f
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 163  HHSHQSNFCSECYDVEPLFINNIKSVPMLQKP 68
            H+   SN+  E  D EPL++  ++S P    P
Sbjct: 931  HYGVCSNYLREISDGEPLYV-FVRSAPNFYMP 961


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -2

Query: 235 RSIATHHLEINNYPLPLNVHKNHRHHSHQSNFCSECYDVEP 113
           R  + HH +  N+ +   +   H HH HQ+      +  +P
Sbjct: 330 RGSSPHH-QHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQP 369


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 550 NLYFYSYHY*VYRLKLCCNQNYV 482
           N Y Y+Y+   Y  KL  N NY+
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYI 115


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 550 NLYFYSYHY*VYRLKLCCNQNYV 482
           N Y Y+Y+   Y  KL  N NY+
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYI 115


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 550 NLYFYSYHY*VYRLKLCCNQNYV 482
           N Y Y+Y+   Y  KL  N NY+
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYI 115


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 550 NLYFYSYHY*VYRLKLCCNQNYV 482
           N Y Y+Y+   Y  KL  N NY+
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYI 115


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 184 NVHKNHRHHSHQSN 143
           N H +  HHS +SN
Sbjct: 444 NQHNDQAHHSSKSN 457


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 406 MSCLDELRNILGDTVSEN 459
           +SCL ELRN+   T+  N
Sbjct: 401 VSCLRELRNLGRKTIMVN 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,139
Number of Sequences: 438
Number of extensions: 2737
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)